Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D2E16_RS08430 Genome accession   NZ_CP032064
Coordinates   1755389..1755985 (-) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis strain YSJ17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1750389..1760985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS08405 (D2E16_08665) - 1750598..1751959 (-) 1362 WP_192368971.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  D2E16_RS08410 (D2E16_08670) - 1752014..1752682 (-) 669 WP_192368970.1 ABC transporter ATP-binding protein -
  D2E16_RS08415 (D2E16_08675) - 1752692..1753768 (-) 1077 WP_192368969.1 ABC transporter permease -
  D2E16_RS08420 (D2E16_08680) - 1753770..1754150 (-) 381 WP_192368968.1 OsmC family protein -
  D2E16_RS08425 (D2E16_08685) - 1754238..1755284 (-) 1047 WP_192368967.1 D-alanine--D-alanine ligase -
  D2E16_RS08430 (D2E16_08690) recR 1755389..1755985 (-) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  D2E16_RS08435 (D2E16_08695) pbp2b 1755994..1758066 (-) 2073 WP_192368966.1 penicillin-binding protein PBP2B -
  D2E16_RS08440 (D2E16_08700) vga(F) 1758158..1759543 (-) 1386 WP_225620735.1 ABC-F type ribosomal protection protein Vga(F) -
  D2E16_RS08445 (D2E16_08710) vicX 1760075..1760878 (-) 804 WP_004298858.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=274202 D2E16_RS08430 WP_002935848.1 1755389..1755985(-) (recR) [Streptococcus suis strain YSJ17]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=274202 D2E16_RS08430 WP_002935848.1 1755389..1755985(-) (recR) [Streptococcus suis strain YSJ17]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCTATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATTGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCCATTGAGAACAGGACAGAACTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49