Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   RK61_RS13050 Genome accession   NZ_CP026964
Coordinates   2530695..2531264 (+) Length   189 a.a.
NCBI ID   WP_000287268.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2525695..2536264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK61_RS13015 (RK61_13015) - 2526968..2527240 (-) 273 WP_001797239.1 lactococcin 972 family bacteriocin -
  RK61_RS13020 (RK61_13020) - 2527250..2527351 (-) 102 WP_031893173.1 hypothetical protein -
  RK61_RS14860 (RK61_13025) - 2527890..2527967 (-) 78 WP_099112139.1 putative holin-like toxin -
  RK61_RS13030 (RK61_13030) - 2528208..2528810 (-) 603 WP_001033867.1 CPBP family glutamic-type intramembrane protease -
  RK61_RS13035 (RK61_13035) - 2528825..2529001 (-) 177 WP_000214898.1 YkvS family protein -
  RK61_RS13040 (RK61_13040) - 2529200..2530186 (+) 987 WP_000668820.1 lipoate--protein ligase -
  RK61_RS13045 (RK61_13045) - 2530267..2530485 (-) 219 WP_000876826.1 IDEAL domain-containing protein -
  RK61_RS13050 (RK61_13050) comK/comK1 2530695..2531264 (+) 570 WP_000287268.1 competence protein ComK Regulator
  RK61_RS13065 (RK61_13065) - 2531751..2533262 (-) 1512 WP_000414172.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  RK61_RS13070 (RK61_13070) - 2533401..2534759 (-) 1359 WP_000021864.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22626.82 Da        Isoelectric Point: 9.7253

>NTDB_id=274029 RK61_RS13050 WP_000287268.1 2530695..2531264(+) (comK/comK1) [Staphylococcus aureus strain FDAARGOS_2]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYRVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=274029 RK61_RS13050 WP_000287268.1 2530695..2531264(+) (comK/comK1) [Staphylococcus aureus strain FDAARGOS_2]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACAGGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995

Multiple sequence alignment