Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RK64_RS08280 Genome accession   NZ_CP026962
Coordinates   1662055..1662501 (-) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1657055..1667501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK64_RS08250 (RK64_08250) gcvPA 1657981..1659327 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  RK64_RS08255 (RK64_08255) gcvT 1659347..1660438 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  RK64_RS08260 (RK64_08260) - 1660597..1661121 (-) 525 WP_001015117.1 shikimate kinase -
  RK64_RS08265 (RK64_08265) - 1661111..1661257 (-) 147 WP_001789879.1 hypothetical protein -
  RK64_RS08270 (RK64_08270) comGF 1661354..1661851 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  RK64_RS08275 (RK64_08275) comGE 1661769..1662068 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  RK64_RS08280 (RK64_08280) comGD 1662055..1662501 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  RK64_RS08285 (RK64_08285) comGC 1662479..1662790 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  RK64_RS08290 (RK64_08290) comGB 1662804..1663874 (-) 1071 Protein_1560 competence type IV pilus assembly protein ComGB -
  RK64_RS08295 (RK64_08295) comGA 1663846..1664820 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  RK64_RS08300 (RK64_08300) - 1664872..1665495 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  RK64_RS08305 (RK64_08305) - 1665492..1665821 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RK64_RS08310 (RK64_08310) - 1665821..1666807 (-) 987 WP_000161314.1 ROK family glucokinase -
  RK64_RS08315 (RK64_08315) - 1666804..1667007 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=273971 RK64_RS08280 WP_001790850.1 1662055..1662501(-) (comGD) [Staphylococcus aureus strain FDAARGOS_6]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=273971 RK64_RS08280 WP_001790850.1 1662055..1662501(-) (comGD) [Staphylococcus aureus strain FDAARGOS_6]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment