Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RL01_RS08275 Genome accession   NZ_CP026957
Coordinates   1569062..1569631 (-) Length   189 a.a.
NCBI ID   WP_000872877.1    Uniprot ID   A0A641A2F3
Organism   Staphylococcus aureus strain FDAARGOS_43     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1564062..1574631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL01_RS08230 (RL01_08230) - 1564536..1565144 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  RL01_RS08235 (RL01_08235) rplL 1565319..1565687 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RL01_RS08240 (RL01_08240) rplJ 1565730..1566230 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  RL01_RS08250 (RL01_08250) rplA 1566502..1567194 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  RL01_RS08255 (RL01_08255) rplK 1567402..1567824 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  RL01_RS08260 (RL01_08260) nusG 1568005..1568553 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RL01_RS08265 (RL01_08265) secE 1568566..1568748 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RL01_RS08270 (RL01_08270) rpmG 1568804..1568947 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  RL01_RS08275 (RL01_08275) sigH 1569062..1569631 (-) 570 WP_000872877.1 sigma-70 family RNA polymerase sigma factor Regulator
  RL01_RS08280 (RL01_08280) - 1569712..1570236 (-) 525 WP_000664738.1 NYN domain-containing protein -
  RL01_RS08285 (RL01_08285) rlmB 1570236..1570982 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RL01_RS08290 (RL01_08290) - 1570990..1571394 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RL01_RS08295 (RL01_08295) cysS 1571387..1572787 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  RL01_RS08300 (RL01_08300) cysE 1572771..1573418 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=273810 RL01_RS08275 WP_000872877.1 1569062..1569631(-) (sigH) [Staphylococcus aureus strain FDAARGOS_43]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSVFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=273810 RL01_RS08275 WP_000872877.1 1569062..1569631(-) (sigH) [Staphylococcus aureus strain FDAARGOS_43]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGTATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

100

100

1
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment