Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CCU01_RS06695 Genome accession   NZ_CP031919
Coordinates   1312025..1312762 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O145:NM strain FWSEC0002     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1307025..1317762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU01_RS06665 (CCU01_006990) yfiL 1307183..1307548 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CCU01_RS06670 (CCU01_006995) aroF 1307758..1308828 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CCU01_RS06675 (CCU01_007000) tyrA 1308839..1309960 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CCU01_RS06680 (CCU01_007005) pheA 1310003..1311163 (-) 1161 WP_000200122.1 bifunctional chorismate mutase/prephenate dehydratase -
  CCU01_RS06685 (CCU01_007010) pheL 1311262..1311309 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CCU01_RS06690 (CCU01_007015) raiA 1311413..1311754 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CCU01_RS06695 (CCU01_007025) comL 1312025..1312762 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CCU01_RS06700 (CCU01_007030) rluD 1312897..1313877 (+) 981 WP_000079110.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CCU01_RS06705 (CCU01_007035) yfiH 1313874..1314605 (+) 732 WP_000040153.1 purine nucleoside phosphorylase YfiH -
  CCU01_RS06710 (CCU01_007040) clpC 1314735..1317308 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=273573 CCU01_RS06695 WP_000197686.1 1312025..1312762(-) (comL) [Escherichia coli O145:NM strain FWSEC0002]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=273573 CCU01_RS06695 WP_000197686.1 1312025..1312762(-) (comL) [Escherichia coli O145:NM strain FWSEC0002]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTAGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376