Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CCU02_RS21585 Genome accession   NZ_CP031916
Coordinates   4180708..4181445 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O45:H2 strain FWSEC0003     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4175708..4186445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU02_RS21570 (CCU02_022645) clpC 4176162..4178735 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CCU02_RS21575 (CCU02_022650) yfiH 4178865..4179596 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  CCU02_RS21580 (CCU02_022655) rluD 4179593..4180573 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CCU02_RS21585 (CCU02_022660) comL 4180708..4181445 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CCU02_RS21590 (CCU02_022670) raiA 4181716..4182057 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CCU02_RS21595 (CCU02_022675) pheL 4182161..4182208 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CCU02_RS21600 (CCU02_022680) pheA 4182307..4183467 (+) 1161 WP_000200118.1 bifunctional chorismate mutase/prephenate dehydratase -
  CCU02_RS21605 (CCU02_022685) tyrA 4183510..4184631 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CCU02_RS21610 (CCU02_022690) aroF 4184642..4185712 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CCU02_RS21615 (CCU02_022695) yfiL 4185922..4186287 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=273522 CCU02_RS21585 WP_000197686.1 4180708..4181445(+) (comL) [Escherichia coli O45:H2 strain FWSEC0003]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=273522 CCU02_RS21585 WP_000197686.1 4180708..4181445(+) (comL) [Escherichia coli O45:H2 strain FWSEC0003]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376