Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CCU03_RS14075 Genome accession   NZ_CP031912
Coordinates   2810836..2811492 (+) Length   218 a.a.
NCBI ID   WP_000611339.1    Uniprot ID   -
Organism   Escherichia coli O111:NM strain FWSEC0005     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2805836..2816492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU03_RS14045 (CCU03_014780) dcyD 2806716..2807702 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  CCU03_RS14050 (CCU03_014785) tcyL 2807717..2808385 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  CCU03_RS14055 (CCU03_014790) tcyN 2808382..2809134 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  CCU03_RS14060 (CCU03_014795) sdiA 2809364..2810086 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  CCU03_RS14065 (CCU03_014800) yecF 2810153..2810377 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  CCU03_RS14070 yecU 2810364..2810540 (-) 177 WP_000590347.1 protein YecU -
  CCU03_RS26540 - 2810623..2810694 (-) 72 Protein_2734 transcriptional regulator -
  CCU03_RS14075 (CCU03_014805) letA 2810836..2811492 (+) 657 WP_000611339.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  CCU03_RS14080 (CCU03_014810) uvrC 2811489..2813321 (+) 1833 WP_001283425.1 excinuclease ABC subunit UvrC Machinery gene
  CCU03_RS14085 (CCU03_014815) pgsA 2813378..2813926 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CCU03_RS14105 (CCU03_014835) yecA 2814576..2815241 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23920.71 Da        Isoelectric Point: 6.9614

>NTDB_id=273358 CCU03_RS14075 WP_000611339.1 2810836..2811492(+) (letA) [Escherichia coli O111:NM strain FWSEC0005]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEVSCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=273358 CCU03_RS14075 WP_000611339.1 2810836..2811492(+) (letA) [Escherichia coli O111:NM strain FWSEC0005]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGTATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482