Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C5F71_RS04795 Genome accession   NZ_CP026881
Coordinates   983024..985288 (-) Length   754 a.a.
NCBI ID   WP_256588116.1    Uniprot ID   -
Organism   Pseudomonas sp. LG1D9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 978024..990288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5F71_RS04760 murB 978427..979446 (-) 1020 WP_104910738.1 UDP-N-acetylmuramate dehydrogenase -
  C5F71_RS04765 - 979443..979907 (-) 465 WP_029299713.1 low molecular weight protein-tyrosine-phosphatase -
  C5F71_RS04770 kdsB 979907..980671 (-) 765 WP_070994651.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C5F71_RS04775 - 980668..980853 (-) 186 WP_003174668.1 Trm112 family protein -
  C5F71_RS04780 lpxK 980878..981888 (-) 1011 WP_104910739.1 tetraacyldisaccharide 4'-kinase -
  C5F71_RS04785 - 981888..982316 (-) 429 WP_029299722.1 biopolymer transporter ExbD -
  C5F71_RS04790 exbB 982313..982948 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C5F71_RS04795 comA 983024..985288 (-) 2265 WP_256588116.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C5F71_RS04800 - 985425..985940 (+) 516 WP_029299728.1 DUF2062 domain-containing protein -
  C5F71_RS04805 - 986441..989194 (+) 2754 WP_029299730.1 response regulator -
  C5F71_RS04810 - 989297..990286 (+) 990 WP_104910740.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 754 a.a.        Molecular weight: 82051.58 Da        Isoelectric Point: 11.0928

>NTDB_id=273051 C5F71_RS04795 WP_256588116.1 983024..985288(-) (comA) [Pseudomonas sp. LG1D9]
MRTGMFALALGLLALRLLPALPPVGWLLVLPVVALMLLPFRTYPLAFFLLGLGWACFSAQRALDDRLSPALDGQTRWLEG
RVSGLPQQANGVVRFELSDSRSRQDRLPQRIRVSWQGGPAVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRVGAIG
SVKDGQRLAPARHAWRDGIRQQLLAVDAQGREAGLAALVLGDGSGLAAEDWRILQATGTVHLLVISGQHIGLLSGLIYAL
VAGLARYGGWPRRLPWLPWACGLAFTGVLAYGVLAGFEVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLIIEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWRAWLAWTRAQWLIAIGLFPLLLILGLPISLSAPLANLFAVPWISLLVLPLAL
AGTLLLALPWLGGGLLWLAGGALDWLFMALAMLAERVPAWMPAEVPVGYWLLSLLGALLLLMPKGIPFRLLGWPLLLLAV
FPPRESIPLGQVAVEQLDVGQGLSIVLRTRNHVLLYDAGPRLGEFDLGERVVLPALRKLGVGQVDLMLLSHADADHAGGA
AAVAAVARGLPVKRVVGGETQGLPAFLQTQACVSGEQWEWDGVAFQLWQWADASNGNAKSCVLQVQANGERLLLTGDIDR
EAERALLATPLAVATDWLQAPHHGSRSSSSWPFVQRVAPKAVLISRGRGNSFGHPHPQVLARYRYLRSAIYDSAEQGAIR
LRLGAFQAPVMARSQRRFWRAPVIDSYQRPVPAT

Nucleotide


Download         Length: 2265 bp        

>NTDB_id=273051 C5F71_RS04795 WP_256588116.1 983024..985288(-) (comA) [Pseudomonas sp. LG1D9]
ATGCGTACAGGGATGTTTGCGCTGGCGTTGGGGCTGCTGGCGTTGCGCCTGCTGCCTGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGTTGCCGGTGGTGGCGTTGATGCTGCTGCCGTTTCGAACTTATCCGCTGGCATTTTTCCTGTTGGGCCTGGGGT
GGGCCTGTTTCAGCGCGCAACGGGCCCTCGACGACCGACTCAGCCCCGCATTGGACGGCCAGACTCGCTGGCTGGAAGGG
CGCGTCAGCGGGCTGCCGCAGCAGGCCAATGGGGTGGTGCGCTTCGAGTTGAGCGACAGCCGGTCACGTCAGGACCGGCT
GCCCCAGCGTATTCGCGTGAGCTGGCAGGGTGGCCCCGCAGTGCGCAGCGGTGAGCGCTGGCGTTTGGCGGTGACCCTCA
AGCGTCCCGCCGGCCTACTGAATTTCCATGGCTTCGACCAGGAGGCCTGGCTGTTGGCCCAGCGTGTGGGGGCGATCGGT
TCGGTCAAGGATGGCCAGCGCCTGGCGCCGGCCCGGCATGCCTGGCGCGATGGGATCCGCCAGCAGTTGTTGGCAGTCGA
TGCCCAGGGCCGCGAAGCCGGGCTGGCTGCACTGGTGCTGGGCGACGGCTCCGGTCTGGCCGCCGAGGACTGGCGCATTT
TGCAGGCCACTGGCACCGTGCATCTATTGGTCATCTCCGGTCAACATATCGGCCTGTTGTCGGGCTTGATCTACGCCCTG
GTGGCCGGGCTGGCCCGCTACGGCGGCTGGCCCAGGCGCTTGCCCTGGCTGCCTTGGGCCTGCGGCCTGGCATTTACCGG
CGTGCTGGCCTATGGCGTGCTGGCCGGTTTTGAAGTGCCGGTGCAGCGGGCCTGTGTAATGGTGGGGCTGGTGCTGCTGT
GGCGCTTGCGGTTTCGCCATCTGGGGATCTGGTGGCCACTACTGCTGGCCCTGAATGCGGTGTTGATCATCGAGCCGCTG
GCCAGCCTGCAACCGGGGTTTTGGCTGTCGTTTGCCGCCGTGGCCGTGTTGGTGCTGGCCTTCGGCGGCCGCCTGGGGCC
ATGGCGCGCCTGGCTTGCCTGGACCCGTGCCCAATGGCTGATCGCTATTGGTCTGTTCCCGCTGCTGCTGATCCTCGGCC
TGCCCATCAGCTTGAGCGCGCCGCTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGCTGGTGCTGCCGTTGGCGCTG
GCGGGCACGCTGTTGCTGGCGCTGCCGTGGCTGGGCGGCGGCCTGCTGTGGCTGGCGGGTGGCGCACTGGATTGGCTGTT
CATGGCCCTGGCCATGCTGGCCGAGCGCGTACCGGCCTGGATGCCTGCCGAGGTGCCCGTTGGCTACTGGTTGCTGAGCC
TGCTGGGGGCACTGCTGTTATTGATGCCCAAGGGCATTCCCTTTCGCCTGCTGGGTTGGCCCCTGTTGCTGCTGGCGGTG
TTCCCGCCCCGCGAATCGATCCCGTTGGGGCAGGTAGCGGTGGAGCAACTGGATGTCGGCCAGGGCCTGTCGATAGTGCT
GCGCACCCGCAACCACGTGCTGTTGTATGACGCCGGTCCGCGGCTTGGGGAGTTTGACCTCGGTGAGCGCGTGGTACTGC
CGGCGCTGCGCAAGCTGGGGGTTGGCCAAGTGGACTTGATGCTGCTCAGTCACGCCGACGCCGACCATGCCGGGGGCGCT
GCGGCGGTTGCGGCGGTTGCGCGCGGGTTGCCGGTCAAGCGGGTGGTGGGCGGGGAAACCCAGGGCCTGCCAGCGTTCCT
CCAGACCCAGGCCTGTGTCAGCGGTGAGCAATGGGAATGGGACGGTGTGGCGTTCCAACTGTGGCAATGGGCGGATGCCA
GCAACGGCAATGCGAAGTCCTGCGTGCTGCAAGTCCAGGCCAATGGTGAGCGCCTGCTGCTGACCGGCGATATAGACCGC
GAGGCCGAGCGGGCCTTGCTCGCCACGCCCCTGGCGGTCGCCACTGATTGGCTGCAAGCGCCCCATCATGGCAGTCGCAG
TTCCTCGTCATGGCCGTTCGTCCAGCGAGTCGCCCCCAAGGCCGTGTTGATCTCCCGCGGGCGTGGCAACTCCTTTGGCC
ATCCGCACCCGCAAGTACTGGCGCGTTACCGGTATTTGCGCAGCGCCATTTATGACAGCGCCGAGCAGGGCGCCATCCGC
CTGCGCCTGGGGGCTTTCCAGGCGCCGGTCATGGCACGCAGCCAGCGTCGTTTCTGGCGCGCGCCTGTCATTGACAGTTA
CCAAAGGCCGGTGCCTGCGACATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.778

95.623

0.572

Multiple sequence alignment