Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C5F71_RS04790 Genome accession   NZ_CP026881
Coordinates   982313..982948 (-) Length   211 a.a.
NCBI ID   WP_029299724.1    Uniprot ID   A0AAJ3B5Y0
Organism   Pseudomonas sp. LG1D9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 977313..987948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5F71_RS04750 - 977563..978033 (-) 471 WP_029299710.1 (2Fe-2S)-binding protein -
  C5F71_RS04760 murB 978427..979446 (-) 1020 WP_104910738.1 UDP-N-acetylmuramate dehydrogenase -
  C5F71_RS04765 - 979443..979907 (-) 465 WP_029299713.1 low molecular weight protein-tyrosine-phosphatase -
  C5F71_RS04770 kdsB 979907..980671 (-) 765 WP_070994651.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C5F71_RS04775 - 980668..980853 (-) 186 WP_003174668.1 Trm112 family protein -
  C5F71_RS04780 lpxK 980878..981888 (-) 1011 WP_104910739.1 tetraacyldisaccharide 4'-kinase -
  C5F71_RS04785 - 981888..982316 (-) 429 WP_029299722.1 biopolymer transporter ExbD -
  C5F71_RS04790 exbB 982313..982948 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C5F71_RS04795 comA 983024..985288 (-) 2265 WP_256588116.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C5F71_RS04800 - 985425..985940 (+) 516 WP_029299728.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.06 Da        Isoelectric Point: 6.8772

>NTDB_id=273050 C5F71_RS04790 WP_029299724.1 982313..982948(-) (exbB) [Pseudomonas sp. LG1D9]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPDHLLGQVWRWIKDKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=273050 C5F71_RS04790 WP_029299724.1 982313..982948(-) (exbB) [Pseudomonas sp. LG1D9]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGCGTGACCCCTGATCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGGACAAGGAAAAACTCAAGGAATTGCGGGCCAATTCCCCCCTGGGCGAGATCCTCGCCGCCGGCCTTGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAATGCATTGAAGAAGCCGCCGCCCGGGTTATCCACGAGCTGGAGCGCTATAT
CAATGCCCTGGGCACCATCGCCGCGATGGCACCGTTGCTCGGCTTGCTTGGCACGGTACTGGGCATGATCGATATCTTCA
GCGCCTTTACCGGTTCGGGCATGACCACCAACGCCTCGGTATTGGCCGGGGGGATTTCCAAGGCCTTGATCACCACGGCT
GCGGGCTTGATGGTGGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAACTGGTGGTGGGTAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGGTCCAGGGCGACCGTGACGTCGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment