Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C8200_RS06725 Genome accession   NZ_CP031902
Coordinates   1326455..1327192 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O104:H4 strain FWSEC0009     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1321455..1332192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8200_RS06695 (C8200_07020) yfiL 1321613..1321978 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  C8200_RS06700 (C8200_07025) aroF 1322188..1323258 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C8200_RS06705 (C8200_07030) tyrA 1323269..1324390 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C8200_RS06710 (C8200_07035) pheA 1324433..1325593 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C8200_RS06715 (C8200_07040) pheL 1325692..1325739 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C8200_RS06720 (C8200_07045) raiA 1325843..1326184 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C8200_RS06725 (C8200_07055) comL 1326455..1327192 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C8200_RS06730 (C8200_07060) rluD 1327327..1328307 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C8200_RS06735 (C8200_07065) yfiH 1328304..1329035 (+) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  C8200_RS06740 (C8200_07070) clpC 1329165..1331738 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=273013 C8200_RS06725 WP_000197686.1 1326455..1327192(-) (comL) [Escherichia coli O104:H4 strain FWSEC0009]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=273013 C8200_RS06725 WP_000197686.1 1326455..1327192(-) (comL) [Escherichia coli O104:H4 strain FWSEC0009]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376