Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D1O36_RS03155 Genome accession   NZ_CP031881
Coordinates   574274..574870 (+) Length   198 a.a.
NCBI ID   WP_134973148.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 569274..579870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O36_RS03130 (D1O36_03130) - 569406..569618 (+) 213 WP_134973145.1 lysophospholipase -
  D1O36_RS03135 (D1O36_03135) - 569869..570060 (+) 192 WP_002950214.1 hypothetical protein -
  D1O36_RS03140 (D1O36_03140) - 570234..571088 (+) 855 WP_024009803.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  D1O36_RS03145 (D1O36_03145) - 571092..571928 (+) 837 WP_134973146.1 NAD(P)H-hydrate dehydratase -
  D1O36_RS03150 (D1O36_03150) pbp2b 572050..574164 (+) 2115 WP_134973147.1 penicillin-binding protein PBP2B -
  D1O36_RS03155 (D1O36_03155) recR 574274..574870 (+) 597 WP_134973148.1 recombination mediator RecR Machinery gene
  D1O36_RS11160 - 575012..575808 (+) 797 Protein_563 PRD domain-containing protein -
  D1O36_RS03175 (D1O36_03175) ybeY 576027..576524 (+) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  D1O36_RS03180 (D1O36_03180) - 576505..576909 (+) 405 WP_134973150.1 diacylglycerol kinase family protein -
  D1O36_RS03185 (D1O36_03185) era 576928..577827 (+) 900 WP_002950226.1 GTPase Era -
  D1O36_RS03190 (D1O36_03190) mutM 577874..578695 (+) 822 WP_022096972.1 DNA-formamidopyrimidine glycosylase -
  D1O36_RS03195 (D1O36_03195) coaE 578692..579285 (+) 594 WP_014621355.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21798.01 Da        Isoelectric Point: 4.5326

>NTDB_id=272569 D1O36_RS03155 WP_134973148.1 574274..574870(+) (recR) [Streptococcus thermophilus strain ST106]
MLYPTPIAKLIDSFSKLPGIGTKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=272569 D1O36_RS03155 WP_134973148.1 574274..574870(+) (recR) [Streptococcus thermophilus strain ST106]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAACTTCCAGGAATTGGGACTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGACGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment