Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECE24377A_RS18675 Genome accession   NC_009801
Coordinates   3422343..3422819 (+) Length   158 a.a.
NCBI ID   WP_001186781.1    Uniprot ID   A7ZRH8
Organism   Escherichia coli O139:H28 str. E24377A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3417343..3427819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE24377A_RS18640 (EcE24377A_3402) - 3418011..3418895 (+) 885 WP_000010409.1 GTPase -
  ECE24377A_RS18650 (EcE24377A_3405) - 3419098..3419778 (+) 681 WP_001282919.1 WYL domain-containing protein -
  ECE24377A_RS18655 (EcE24377A_3406) - 3419926..3420603 (+) 678 WP_001097300.1 hypothetical protein -
  ECE24377A_RS18660 (EcE24377A_3407) - 3420609..3420842 (+) 234 WP_001278282.1 DUF905 family protein -
  ECE24377A_RS18665 (EcE24377A_3408) - 3420932..3421750 (+) 819 WP_001234690.1 DUF932 domain-containing protein -
  ECE24377A_RS18670 (EcE24377A_3409) - 3421842..3422327 (+) 486 WP_000213725.1 antirestriction protein -
  ECE24377A_RS18675 (EcE24377A_3410) radC 3422343..3422819 (+) 477 WP_001186781.1 RadC family protein Machinery gene
  ECE24377A_RS18680 (EcE24377A_3411) - 3422906..3423127 (+) 222 WP_000692348.1 DUF987 domain-containing protein -
  ECE24377A_RS18685 (EcE24377A_3412) cbeA 3423207..3423575 (+) 369 WP_012139188.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ECE24377A_RS18690 (EcE24377A_3413) - 3423665..3424042 (+) 378 WP_000854738.1 TA system toxin CbtA family protein -
  ECE24377A_RS18695 (EcE24377A_3414) - 3424039..3424527 (+) 489 WP_000761672.1 DUF5983 family protein -
  ECE24377A_RS18700 (EcE24377A_3415) - 3424539..3424736 (+) 198 WP_000839234.1 DUF957 domain-containing protein -
  ECE24377A_RS18705 (EcE24377A_3416) - 3424821..3425666 (+) 846 WP_000065749.1 DUF4942 domain-containing protein -
  ECE24377A_RS18710 - 3425735..3426130 (+) 396 WP_000208385.1 DUF6088 family protein -
  ECE24377A_RS18715 (EcE24377A_3417) - 3426123..3427070 (+) 948 WP_012139193.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17598.21 Da        Isoelectric Point: 7.2517

>NTDB_id=27243 ECE24377A_RS18675 WP_001186781.1 3422343..3422819(+) (radC) [Escherichia coli O139:H28 str. E24377A]
MQQLSFLPGEMTPGERSLIQRALKTLGRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=27243 ECE24377A_RS18675 WP_001186781.1 3422343..3422819(+) (radC) [Escherichia coli O139:H28 str. E24377A]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACACCCGGTGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGG
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TTGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZRH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.423

100

0.386

Multiple sequence alignment