Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NMC_RS04430 Genome accession   NC_008767
Coordinates   840599..841198 (+) Length   199 a.a.
NCBI ID   WP_002238455.1    Uniprot ID   A1KTD0
Organism   Neisseria meningitidis FAM18     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 835599..846198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMC_RS04405 (NMC0825) - 835908..836495 (-) 588 WP_002220670.1 superoxide dismutase -
  NMC_RS04410 (NMC0826) dnaB 836658..838064 (+) 1407 WP_002220671.1 replicative DNA helicase -
  NMC_RS04415 (NMC0827) pilH 838373..839047 (+) 675 WP_002247806.1 GspH/FimT family pseudopilin Machinery gene
  NMC_RS04420 (NMC0828) pilV 839071..839682 (+) 612 WP_002247807.1 type IV pilus modification protein PilV Machinery gene
  NMC_RS04425 (NMC0829) pilJ 839679..840620 (+) 942 WP_002248018.1 PilW family protein Machinery gene
  NMC_RS04430 (NMC0830) pilK 840599..841198 (+) 600 WP_002238455.1 pilus assembly PilX family protein Machinery gene
  NMC_RS04435 (NMC0831) pilX 841203..841676 (+) 474 WP_002248019.1 PilX family type IV pilin Machinery gene
  NMC_RS04445 (NMC0832) - 843410..843835 (-) 426 Protein_829 AzlC family ABC transporter permease -
  NMC_RS04450 (NMC0833) dut 843978..844430 (+) 453 WP_002220679.1 dUTP diphosphatase -
  NMC_RS04455 (NMC0834) dapC 844506..845693 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21900.87 Da        Isoelectric Point: 7.5812

>NTDB_id=27236 NMC_RS04430 WP_002238455.1 840599..841198(+) (pilK) [Neisseria meningitidis FAM18]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCEKGLCTAVNVRTNTNNGNEEAFDNIVVQGKPTVEAVKRSCPAKSTGLCIDNKGMEYKKGTRSVSKMPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=27236 NMC_RS04430 WP_002238455.1 840599..841198(+) (pilK) [Neisseria meningitidis FAM18]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAAT
CTACAGGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KTD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

89.163

100

0.91

Multiple sequence alignment