Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMC_RS04415 Genome accession   NC_008767
Coordinates   838373..839047 (+) Length   224 a.a.
NCBI ID   WP_002247806.1    Uniprot ID   A0AAD2J764
Organism   Neisseria meningitidis FAM18     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 833373..844047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMC_RS04395 (NMC0823) - 834164..834496 (+) 333 WP_002213854.1 hypothetical protein -
  NMC_RS04400 (NMC0824) - 834827..835336 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NMC_RS04405 (NMC0825) - 835908..836495 (-) 588 WP_002220670.1 superoxide dismutase -
  NMC_RS04410 (NMC0826) dnaB 836658..838064 (+) 1407 WP_002220671.1 replicative DNA helicase -
  NMC_RS04415 (NMC0827) pilH 838373..839047 (+) 675 WP_002247806.1 GspH/FimT family pseudopilin Machinery gene
  NMC_RS04420 (NMC0828) pilV 839071..839682 (+) 612 WP_002247807.1 type IV pilus modification protein PilV Machinery gene
  NMC_RS04425 (NMC0829) pilJ 839679..840620 (+) 942 WP_002248018.1 PilW family protein Machinery gene
  NMC_RS04430 (NMC0830) pilK 840599..841198 (+) 600 WP_002238455.1 pilus assembly PilX family protein Machinery gene
  NMC_RS04435 (NMC0831) pilX 841203..841676 (+) 474 WP_002248019.1 PilX family type IV pilin Machinery gene
  NMC_RS04445 (NMC0832) - 843410..843835 (-) 426 Protein_829 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25135.80 Da        Isoelectric Point: 10.0449

>NTDB_id=27233 NMC_RS04415 WP_002247806.1 838373..839047(+) (pilH) [Neisseria meningitidis FAM18]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGRGMLAFGDKNGNKAYDGDAADVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTKD
QHLTSKSSFFYSDGYIQIVLTDARAVLDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=27233 NMC_RS04415 WP_002247806.1 838373..839047(+) (pilH) [Neisseria meningitidis FAM18]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGCGGCGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAAGAC
CAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTT
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTGATC
GGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

89.767

95.982

0.862

Multiple sequence alignment