Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECE24377A_RS16025 Genome accession   NC_009801
Coordinates   2885773..2886510 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O139:H28 str. E24377A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2880773..2891510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE24377A_RS16010 (EcE24377A_2878) clpC 2881227..2883800 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ECE24377A_RS16015 (EcE24377A_2879) yfiH 2883930..2884661 (-) 732 WP_000040113.1 purine nucleoside phosphorylase YfiH -
  ECE24377A_RS16020 (EcE24377A_2880) rluD 2884658..2885638 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECE24377A_RS16025 (EcE24377A_2881) comL 2885773..2886510 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ECE24377A_RS16035 (EcE24377A_2882) raiA 2886781..2887122 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ECE24377A_RS30070 pheL 2887226..2887273 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ECE24377A_RS16040 (EcE24377A_2883) pheA 2887372..2888532 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECE24377A_RS16045 (EcE24377A_2884) tyrA 2888575..2889696 (-) 1122 WP_000225223.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ECE24377A_RS16050 (EcE24377A_2885) aroF 2889707..2890777 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ECE24377A_RS16055 (EcE24377A_2886) yfiL 2890987..2891352 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=27233 ECE24377A_RS16025 WP_000197686.1 2885773..2886510(+) (comL) [Escherichia coli O139:H28 str. E24377A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=27233 ECE24377A_RS16025 WP_000197686.1 2885773..2886510(+) (comL) [Escherichia coli O139:H28 str. E24377A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment