Detailed information NTG0272303

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AM457_RS18875
• Genome accession: NZ_CP026761
• Coordinates: 1279914..1280774 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152274.1
• Uniprot ID: A0AAP1QVT1
• Organism: Acinetobacter baumannii strain AR_0078
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1274914..1285774

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM457_RS05985 (AM457_05985)	-	1275805..1277115 (+)	1311	WP_000753284.1	tetratricopeptide repeat protein	-
AM457_RS05990 (AM457_05990)	-	1277192..1277518 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
AM457_RS05995 (AM457_05995)	rlmB	1277620..1278369 (+)	750	WP_001118148.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AM457_RS06000 (AM457_06000)	-	1278405..1279319 (+)	915	WP_000075013.1	DMT family transporter	-
AM457_RS06005 (AM457_06005)	coaE	1279316..1279912 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
AM457_RS18875 (AM457_06010)	pilD	1279914..1280774 (-)	861	WP_001152274.1	prepilin peptidase	Machinery gene
AM457_RS06015 (AM457_06015)	pilC	1280774..1282000 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
AM457_RS06020 (AM457_06020)	pilB	1282030..1283742 (-)	1713	WP_001274988.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AM457_RS06025 (AM457_06025)	tpiA	1284033..1284827 (+)	795	WP_000016932.1	triose-phosphate isomerase	-
AM457_RS06030 (AM457_06030)	secG	1284840..1285169 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32078.49 Da
• Isoelectric Point: 7.1041

>NTDB_id=272303 AM457_RS18875 WP_001152274.1 1279914..1280774(-) (pilD) [Acinetobacter baumannii strain AR_0078]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=272303 AM457_RS18875 WP_001152274.1 1279914..1280774(-) (pilD) [Acinetobacter baumannii strain AR_0078]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434