Detailed information NTG0272148

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: D1104_RS10745
• Genome accession: NZ_CP031863
• Coordinates: 2252047..2252709 (+)
• Length: 220 a.a.
• NCBI ID: WP_005599756.1
• Uniprot ID: A3N3Q8
• Organism: Actinobacillus pleuropneumoniae serovar 11 str. 56153
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2247047..2257709

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1104_RS10710 (D1104_10765)	-	2247485..2248045 (-)	561	WP_005599745.1	TIGR00730 family Rossman fold protein	-
D1104_RS10715 (D1104_10770)	-	2248108..2248431 (+)	324	WP_005599746.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
D1104_RS10720 (D1104_10775)	crp	2248480..2249154 (-)	675	WP_005599747.1	cAMP-activated global transcriptional regulator CRP	Regulator
D1104_RS10725 (D1104_10780)	-	2249232..2249450 (-)	219	WP_005599748.1	YheU family protein	-
D1104_RS10730 (D1104_10785)	slmA	2249456..2250064 (-)	609	WP_005620316.1	nucleoid occlusion factor SlmA	-
D1104_RS10735 (D1104_10790)	dut	2250170..2250625 (-)	456	WP_005599752.1	dUTP diphosphatase	-
D1104_RS10740 (D1104_10795)	coaBC	2250634..2251839 (-)	1206	WP_005602882.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
D1104_RS10745 (D1104_10800)	radC	2252047..2252709 (+)	663	WP_005599756.1	RadC family protein	Machinery gene
D1104_RS10750 (D1104_10805)	rpmB	2252878..2253114 (+)	237	WP_005599762.1	50S ribosomal protein L28	-
D1104_RS10755 (D1104_10810)	rpmG	2253126..2253296 (+)	171	WP_005599764.1	50S ribosomal protein L33	-
D1104_RS10760	-	2253422..2253640 (+)	219	WP_162031030.1	hypothetical protein	-
D1104_RS10765 (D1104_10815)	-	2253727..2254287 (+)	561	WP_005599767.1	hypothetical protein	-
D1104_RS10770 (D1104_10820)	-	2254568..2255932 (+)	1365	WP_005599768.1	diaminobutyrate--2-oxoglutarate transaminase	-
D1104_RS10775 (D1104_10825)	ddc	2256061..2257596 (+)	1536	WP_005620317.1	L-2,4-diaminobutyrate decarboxylase	-

Sequence

Protein

• Length: 220 a.a.
• Molecular weight: 25014.07 Da
• Isoelectric Point: 5.7943

>NTDB_id=272148 D1104_RS10745 WP_005599756.1 2252047..2252709(+) (radC) [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGNCTPSESDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR

Nucleotide

• Length: 663 bp

>NTDB_id=272148 D1104_RS10745 WP_005599756.1 2252047..2252709(+) (radC) [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
ATGGATAACGTTGTATTAATGCCAAGAGAAAAATTATTGGCCTCCGGAGCGGAATCACTCACCGATCAAGAATTGTTGGC
GATTTTTCTACGTACGGGTATCAAGGGCATGCCTGTTATGCAATTATCGCAAGAAGTATTGAACGGTTTCGGTTCGTTAC
GAGAATTGTTAAGTGCTGATTTAGCGACTTTCTGCCGTATGAAAGGCTTAGGACAAACGCAATTTATTCAGTTGCAAGCC
TCAAAGGAAATGACTAAGCGTTATTTAGCACAACAAATGCAAGTGAGAGAAAATATTAATGAACCTTATTTAGCCGTAAT
GTGCTTTCAAGCCGAATTGGAATCGGAAGAACGAGAGGTATTTATGGTGATGTTTCTTGATAATCAGAATCGGTTGATTA
AAAAAGAAAAAATGTTTTACGGCACCATTAATCAAGCAACGGTTTACCCTAGAGAAATCATTAAAGAAGCATTAAAATGT
AATGCGGCGGCAATTATTGTTGCACACAATCATCCGTCGGGAAATTGTACTCCTTCCGAATCGGATAGAGCATTGACGAA
AAAACTGGAAATGGCGTGCGATTTGGTCGGTATTCGCTTTGTCGATCATATCGTTGTCGGCAAAGGCGATTATTTTTCCT
TCGAAGAAGAGAAGTTTCGCTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (8-74)

• RadC-like JAB domain (RadC) (102-218)

3D structure

• AlphaFold DB: A3N3Q8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	63.721	97.727	0.623