Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D1105_RS10270 Genome accession   NZ_CP031862
Coordinates   2178983..2179645 (+) Length   220 a.a.
NCBI ID   WP_005599756.1    Uniprot ID   A3N3Q8
Organism   Actinobacillus pleuropneumoniae strain 8329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2173983..2184645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1105_RS10235 (D1105_10310) - 2174421..2174981 (-) 561 WP_005616339.1 TIGR00730 family Rossman fold protein -
  D1105_RS10240 (D1105_10315) - 2175044..2175367 (+) 324 WP_005602867.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  D1105_RS10245 (D1105_10320) crp 2175416..2176090 (-) 675 WP_005599747.1 cAMP-activated global transcriptional regulator CRP Regulator
  D1105_RS10250 (D1105_10325) - 2176168..2176386 (-) 219 WP_005599748.1 YheU family protein -
  D1105_RS10255 (D1105_10330) slmA 2176392..2177000 (-) 609 WP_005620316.1 nucleoid occlusion factor SlmA -
  D1105_RS10260 (D1105_10335) dut 2177106..2177561 (-) 456 WP_005599752.1 dUTP diphosphatase -
  D1105_RS10265 (D1105_10340) coaBC 2177570..2178775 (-) 1206 WP_005616341.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D1105_RS10270 (D1105_10345) radC 2178983..2179645 (+) 663 WP_005599756.1 RadC family protein Machinery gene
  D1105_RS10275 (D1105_10350) rpmB 2179814..2180050 (+) 237 WP_005599762.1 50S ribosomal protein L28 -
  D1105_RS10280 (D1105_10355) rpmG 2180062..2180232 (+) 171 WP_005599764.1 50S ribosomal protein L33 -
  D1105_RS10285 (D1105_10360) - 2180662..2181222 (+) 561 WP_005599767.1 hypothetical protein -
  D1105_RS10290 (D1105_10365) - 2181503..2182867 (+) 1365 WP_005599768.1 diaminobutyrate--2-oxoglutarate transaminase -
  D1105_RS10295 (D1105_10370) ddc 2182996..2184531 (+) 1536 WP_012263470.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25014.07 Da        Isoelectric Point: 5.7943

>NTDB_id=272093 D1105_RS10270 WP_005599756.1 2178983..2179645(+) (radC) [Actinobacillus pleuropneumoniae strain 8329]
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGNCTPSESDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=272093 D1105_RS10270 WP_005599756.1 2178983..2179645(+) (radC) [Actinobacillus pleuropneumoniae strain 8329]
ATGGATAACGTTGTATTAATGCCAAGAGAAAAATTATTGGCCTCCGGAGCGGAATCACTCACCGATCAAGAATTGTTGGC
GATTTTTCTACGTACGGGTATCAAGGGCATGCCTGTTATGCAATTATCGCAAGAAGTATTGAACGGTTTCGGTTCGTTAC
GAGAATTGTTAAGTGCTGATTTAGCGACTTTCTGCCGTATGAAAGGCTTAGGACAAACGCAATTTATTCAGTTGCAAGCC
TCAAAGGAAATGACTAAGCGTTATTTAGCACAACAAATGCAAGTGAGAGAAAATATTAATGAACCTTATTTAGCCGTAAT
GTGCTTTCAAGCCGAATTGGAATCGGAAGAACGAGAGGTATTTATGGTGATGTTTCTTGATAATCAGAATCGGTTGATTA
AAAAAGAAAAAATGTTTTACGGCACCATTAATCAAGCAACGGTTTACCCTAGAGAAATCATTAAAGAAGCATTAAAATGT
AATGCGGCGGCAATTATTGTTGCACACAATCATCCGTCGGGAAATTGTACTCCTTCCGAATCGGATAGAGCATTGACGAA
AAAACTGGAAATGGCGTGCGATTTGGTCGGTATTCGCTTTGTCGATCATATCGTTGTCGGCAAAGGCGATTATTTTTCCT
TCGAAGAAGAGAAGTTTCGCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-74)

RadC-like JAB domain (RadC)

(102-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N3Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

63.721

97.727

0.623