Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D1106_RS10660 Genome accession   NZ_CP031861
Coordinates   2235709..2236371 (+) Length   220 a.a.
NCBI ID   WP_005599756.1    Uniprot ID   A3N3Q8
Organism   Actinobacillus pleuropneumoniae strain N 273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2230709..2241371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1106_RS10625 (D1106_10660) - 2231147..2231707 (-) 561 WP_237593959.1 TIGR00730 family Rossman fold protein -
  D1106_RS10630 (D1106_10665) - 2231770..2232093 (+) 324 WP_012263466.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  D1106_RS10635 (D1106_10670) crp 2232142..2232816 (-) 675 WP_237594335.1 cAMP-activated global transcriptional regulator CRP Regulator
  D1106_RS10640 (D1106_10675) - 2232894..2233112 (-) 219 WP_005599748.1 YheU family protein -
  D1106_RS10645 (D1106_10680) slmA 2233118..2233726 (-) 609 WP_237593960.1 nucleoid occlusion factor SlmA -
  D1106_RS10650 (D1106_10685) dut 2233832..2234287 (-) 456 WP_005599752.1 dUTP diphosphatase -
  D1106_RS10655 (D1106_10690) coaBC 2234296..2235501 (-) 1206 WP_005602882.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D1106_RS10660 (D1106_10695) radC 2235709..2236371 (+) 663 WP_005599756.1 RadC family protein Machinery gene
  D1106_RS10665 (D1106_10700) rpmB 2236540..2236776 (+) 237 WP_005599762.1 50S ribosomal protein L28 -
  D1106_RS10670 (D1106_10705) rpmG 2236788..2236958 (+) 171 WP_005599764.1 50S ribosomal protein L33 -
  D1106_RS10675 (D1106_10710) - 2237202..2237762 (+) 561 WP_005599767.1 hypothetical protein -
  D1106_RS10680 (D1106_10715) - 2238043..2239407 (+) 1365 WP_005599768.1 diaminobutyrate--2-oxoglutarate transaminase -
  D1106_RS10685 (D1106_10720) ddc 2239536..2241071 (+) 1536 WP_215577785.1 pyridoxal phosphate-dependent decarboxylase family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25014.07 Da        Isoelectric Point: 5.7943

>NTDB_id=272037 D1106_RS10660 WP_005599756.1 2235709..2236371(+) (radC) [Actinobacillus pleuropneumoniae strain N 273]
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGNCTPSESDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=272037 D1106_RS10660 WP_005599756.1 2235709..2236371(+) (radC) [Actinobacillus pleuropneumoniae strain N 273]
ATGGATAACGTTGTATTAATGCCAAGAGAAAAATTATTGGCCTCCGGAGCGGAATCACTCACCGATCAAGAATTGTTGGC
GATTTTTCTACGTACGGGTATCAAGGGCATGCCTGTTATGCAATTATCGCAAGAAGTATTGAACGGTTTCGGTTCGTTAC
GAGAATTGTTAAGTGCTGATTTAGCGACTTTCTGCCGTATGAAAGGCTTAGGACAAACGCAATTTATTCAGTTGCAAGCC
TCAAAGGAAATGACTAAGCGTTATTTAGCACAACAAATGCAAGTGAGAGAAAATATTAATGAACCTTATTTAGCCGTAAT
GTGCTTTCAAGCCGAATTGGAATCGGAAGAACGAGAGGTATTTATGGTGATGTTTCTTGATAATCAGAATCGGTTGATTA
AAAAAGAAAAAATGTTTTACGGCACCATTAATCAAGCAACGGTTTACCCTAGAGAAATCATTAAAGAAGCATTAAAATGT
AATGCGGCGGCAATTATTGTTGCACACAATCATCCGTCGGGAAATTGTACTCCTTCCGAATCGGATAGAGCATTGACGAA
AAAACTGGAAATGGCGTGCGATTTGGTCGGTATTCGCTTTGTCGATCATATCGTTGTCGGCAAAGGCGATTATTTTTCCT
TCGAAGAAGAGAAGTTTCGCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-74)

RadC-like JAB domain (RadC)

(102-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N3Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

63.721

97.727

0.623