Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | C2I28_RS04105 | Genome accession | NZ_CP026736 |
| Coordinates | 794002..795054 (-) | Length | 350 a.a. |
| NCBI ID | WP_028411611.1 | Uniprot ID | - |
| Organism | Priestia megaterium strain YC4-R4 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 789002..800054
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2I28_RS04065 (C2I28_03995) | - | 790018..790842 (+) | 825 | WP_099331285.1 | YqhG family protein | - |
| C2I28_RS04070 (C2I28_04000) | - | 790866..791051 (-) | 186 | WP_013059170.1 | YqzE family protein | - |
| C2I28_RS04075 (C2I28_04005) | comGG | 791095..791469 (-) | 375 | WP_098112944.1 | competence type IV pilus minor pilin ComGG | - |
| C2I28_RS04080 (C2I28_04010) | comGF | 791459..791896 (-) | 438 | WP_099331286.1 | competence type IV pilus minor pilin ComGF | - |
| C2I28_RS04085 (C2I28_04015) | - | 791893..792231 (-) | 339 | WP_098112946.1 | type II secretion system protein | - |
| C2I28_RS04090 (C2I28_04020) | comGD | 792215..792652 (-) | 438 | WP_016765559.1 | competence type IV pilus minor pilin ComGD | - |
| C2I28_RS04095 (C2I28_04025) | comGC | 792639..792950 (-) | 312 | WP_108674315.1 | competence type IV pilus major pilin ComGC | - |
| C2I28_RS04100 (C2I28_04030) | comGB | 792965..794011 (-) | 1047 | WP_033579696.1 | competence type IV pilus assembly protein ComGB | - |
| C2I28_RS04105 (C2I28_04035) | comGA | 794002..795054 (-) | 1053 | WP_028411611.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| C2I28_RS04110 (C2I28_04040) | - | 795325..795708 (-) | 384 | WP_028411612.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| C2I28_RS04115 (C2I28_04045) | - | 795970..796206 (+) | 237 | WP_013059179.1 | DUF2626 domain-containing protein | - |
| C2I28_RS04120 (C2I28_04050) | - | 796244..796876 (-) | 633 | WP_028411613.1 | MBL fold metallo-hydrolase | - |
| C2I28_RS04125 (C2I28_04055) | - | 797086..797262 (+) | 177 | WP_028411614.1 | DUF2759 domain-containing protein | - |
| C2I28_RS04130 (C2I28_04060) | - | 797298..798200 (-) | 903 | WP_028411615.1 | M14 family metallocarboxypeptidase | - |
| C2I28_RS04135 (C2I28_04065) | - | 798312..799280 (-) | 969 | WP_098112947.1 | ROK family glucokinase | - |
| C2I28_RS04140 (C2I28_04070) | - | 799283..799489 (-) | 207 | WP_028411617.1 | YqgQ family protein | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 39596.97 Da Isoelectric Point: 9.0586
>NTDB_id=272036 C2I28_RS04105 WP_028411611.1 794002..795054(-) (comGA) [Priestia megaterium strain YC4-R4]
MTEIEQFATYVIRDACECRSSDVHIVPRKKDAVIQLRIDQELILKRVISKEMSERLISHFKFLGGMDIGERRKPQNGALT
TSVDHYQVNLRLSTLPTSHDESLVIRLLPHQQSTSLKHLSLFPEHTKKLISLLKFSHGLIIFTGPTGSGKTTTLYTLLHE
VKHLFNRNVITLEDPIEKPSETVLQVQVNERAGITYTTGLKAILRHDPDIIMVGEIRDSETAKIAVRAALTGHLVLTTMH
TKDTKGSLYRLLEFGVSFQEMEQTLVAVAAQRLVEIRCPLCSGKCHPACKKMRKHRQSSIYELLYGKELSAVMREVKGEN
ADYDYKTLRDVILKGIALGYLYPHSLDGWG
MTEIEQFATYVIRDACECRSSDVHIVPRKKDAVIQLRIDQELILKRVISKEMSERLISHFKFLGGMDIGERRKPQNGALT
TSVDHYQVNLRLSTLPTSHDESLVIRLLPHQQSTSLKHLSLFPEHTKKLISLLKFSHGLIIFTGPTGSGKTTTLYTLLHE
VKHLFNRNVITLEDPIEKPSETVLQVQVNERAGITYTTGLKAILRHDPDIIMVGEIRDSETAKIAVRAALTGHLVLTTMH
TKDTKGSLYRLLEFGVSFQEMEQTLVAVAAQRLVEIRCPLCSGKCHPACKKMRKHRQSSIYELLYGKELSAVMREVKGEN
ADYDYKTLRDVILKGIALGYLYPHSLDGWG
Nucleotide
Download Length: 1053 bp
>NTDB_id=272036 C2I28_RS04105 WP_028411611.1 794002..795054(-) (comGA) [Priestia megaterium strain YC4-R4]
TTGACCGAAATTGAACAGTTTGCTACTTACGTTATACGAGATGCATGTGAGTGTCGAAGTTCTGATGTGCATATTGTGCC
CCGAAAGAAAGATGCTGTGATTCAGCTGCGAATTGACCAGGAGCTTATTTTAAAGAGGGTTATTTCAAAGGAAATGTCTG
AACGGCTCATTTCGCATTTTAAATTTTTAGGGGGAATGGATATTGGGGAGCGCAGAAAACCTCAAAATGGTGCATTGACC
ACTTCCGTTGATCACTATCAAGTAAATTTGCGTTTATCAACTCTTCCTACTTCTCATGATGAAAGTCTTGTTATTCGGCT
TTTGCCTCATCAACAATCTACCTCTCTCAAACATTTATCTCTTTTTCCTGAACATACTAAAAAGCTTATTTCTCTCTTGA
AATTCTCTCATGGATTAATTATTTTTACCGGTCCTACAGGATCAGGTAAAACCACTACTCTATATACTCTTTTACACGAA
GTAAAGCACCTTTTTAATCGAAATGTTATTACACTAGAAGATCCTATTGAAAAACCGAGTGAAACCGTGCTTCAAGTGCA
GGTAAATGAACGCGCAGGGATTACGTATACGACTGGTTTAAAAGCTATATTGCGCCATGATCCAGACATTATCATGGTGG
GAGAAATAAGAGATAGTGAGACCGCCAAAATTGCTGTGAGAGCAGCGCTTACCGGACACTTGGTTTTGACAACGATGCAT
ACTAAAGATACAAAAGGATCTTTGTACAGGCTGCTTGAGTTTGGCGTTAGCTTTCAAGAAATGGAGCAGACTCTTGTAGC
AGTAGCTGCACAGCGTCTTGTAGAAATTCGCTGTCCGCTGTGTTCGGGAAAATGCCACCCTGCTTGTAAAAAAATGAGGA
AGCATCGTCAGTCCAGCATATACGAATTGCTTTATGGCAAGGAGCTTAGCGCAGTGATGAGAGAAGTGAAAGGAGAAAAT
GCGGATTATGATTATAAGACGCTCCGAGATGTTATTCTAAAAGGAATCGCGCTAGGCTATTTATATCCGCATTCGCTAGA
CGGATGGGGGTAA
TTGACCGAAATTGAACAGTTTGCTACTTACGTTATACGAGATGCATGTGAGTGTCGAAGTTCTGATGTGCATATTGTGCC
CCGAAAGAAAGATGCTGTGATTCAGCTGCGAATTGACCAGGAGCTTATTTTAAAGAGGGTTATTTCAAAGGAAATGTCTG
AACGGCTCATTTCGCATTTTAAATTTTTAGGGGGAATGGATATTGGGGAGCGCAGAAAACCTCAAAATGGTGCATTGACC
ACTTCCGTTGATCACTATCAAGTAAATTTGCGTTTATCAACTCTTCCTACTTCTCATGATGAAAGTCTTGTTATTCGGCT
TTTGCCTCATCAACAATCTACCTCTCTCAAACATTTATCTCTTTTTCCTGAACATACTAAAAAGCTTATTTCTCTCTTGA
AATTCTCTCATGGATTAATTATTTTTACCGGTCCTACAGGATCAGGTAAAACCACTACTCTATATACTCTTTTACACGAA
GTAAAGCACCTTTTTAATCGAAATGTTATTACACTAGAAGATCCTATTGAAAAACCGAGTGAAACCGTGCTTCAAGTGCA
GGTAAATGAACGCGCAGGGATTACGTATACGACTGGTTTAAAAGCTATATTGCGCCATGATCCAGACATTATCATGGTGG
GAGAAATAAGAGATAGTGAGACCGCCAAAATTGCTGTGAGAGCAGCGCTTACCGGACACTTGGTTTTGACAACGATGCAT
ACTAAAGATACAAAAGGATCTTTGTACAGGCTGCTTGAGTTTGGCGTTAGCTTTCAAGAAATGGAGCAGACTCTTGTAGC
AGTAGCTGCACAGCGTCTTGTAGAAATTCGCTGTCCGCTGTGTTCGGGAAAATGCCACCCTGCTTGTAAAAAAATGAGGA
AGCATCGTCAGTCCAGCATATACGAATTGCTTTATGGCAAGGAGCTTAGCGCAGTGATGAGAGAAGTGAAAGGAGAAAAT
GCGGATTATGATTATAAGACGCTCCGAGATGTTATTCTAAAAGGAATCGCGCTAGGCTATTTATATCCGCATTCGCTAGA
CGGATGGGGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
58.571 |
100 |
0.586 |