Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AM442_RS11530 | Genome accession | NZ_CP026711 |
| Coordinates | 2378124..2378504 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain AR_0063 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2373124..2383504
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM442_RS11500 (AM442_11495) | kdsB | 2374027..2374788 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| AM442_RS11505 (AM442_11500) | - | 2374800..2375780 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| AM442_RS11510 (AM442_11505) | - | 2375792..2376133 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AM442_RS11515 (AM442_11510) | - | 2376151..2376924 (+) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| AM442_RS11520 (AM442_11515) | - | 2376962..2377570 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AM442_RS11525 (AM442_11520) | - | 2377580..2378134 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| AM442_RS11530 (AM442_11525) | xcpV | 2378124..2378504 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AM442_RS11535 (AM442_11530) | xcpW | 2378504..2379205 (+) | 702 | WP_000594590.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AM442_RS11540 (AM442_11535) | gspK | 2379205..2380164 (+) | 960 | WP_000301471.1 | type II secretion system minor pseudopilin GspK | - |
| AM442_RS11545 (AM442_11540) | - | 2380395..2380991 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| AM442_RS11550 (AM442_11545) | ung | 2381042..2381755 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AM442_RS11555 (AM442_11550) | - | 2381752..2382876 (+) | 1125 | WP_086241960.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AM442_RS11560 (AM442_11555) | tadA | 2382883..2383386 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=271952 AM442_RS11530 WP_000836911.1 2378124..2378504(+) (xcpV) [Acinetobacter baumannii strain AR_0063]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=271952 AM442_RS11530 WP_000836911.1 2378124..2378504(+) (xcpV) [Acinetobacter baumannii strain AR_0063]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |