Detailed information NTG0271953

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AM442_RS11535
• Genome accession: NZ_CP026711
• Coordinates: 2378504..2379205 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594590.1
• Uniprot ID: A0A427R546
• Organism: Acinetobacter baumannii strain AR_0063
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2373504..2384205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM442_RS11500 (AM442_11495)	kdsB	2374027..2374788 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AM442_RS11505 (AM442_11500)	-	2374800..2375780 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
AM442_RS11510 (AM442_11505)	-	2375792..2376133 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
AM442_RS11515 (AM442_11510)	-	2376151..2376924 (+)	774	WP_000497301.1	TatD family hydrolase	-
AM442_RS11520 (AM442_11515)	-	2376962..2377570 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
AM442_RS11525 (AM442_11520)	-	2377580..2378134 (+)	555	WP_000841373.1	type II secretion system protein	-
AM442_RS11530 (AM442_11525)	xcpV	2378124..2378504 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
AM442_RS11535 (AM442_11530)	xcpW	2378504..2379205 (+)	702	WP_000594590.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AM442_RS11540 (AM442_11535)	gspK	2379205..2380164 (+)	960	WP_000301471.1	type II secretion system minor pseudopilin GspK	-
AM442_RS11545 (AM442_11540)	-	2380395..2380991 (+)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
AM442_RS11550 (AM442_11545)	ung	2381042..2381755 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
AM442_RS11555 (AM442_11550)	-	2381752..2382876 (+)	1125	WP_086241960.1	enoyl-CoA hydratase/isomerase family protein	-
AM442_RS11560 (AM442_11555)	tadA	2382883..2383386 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
AM442_RS11565 (AM442_11560)	-	2383456..2383899 (+)	444	WP_001246674.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26627.52 Da
• Isoelectric Point: 9.3468

>NTDB_id=271953 AM442_RS11535 WP_000594590.1 2378504..2379205(+) (xcpW) [Acinetobacter baumannii strain AR_0063]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWTYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=271953 AM442_RS11535 WP_000594590.1 2378504..2379205(+) (xcpW) [Acinetobacter baumannii strain AR_0063]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGACTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A427R546

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991