Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AM435_RS11885 Genome accession   NZ_CP026707
Coordinates   2193208..2194026 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AR_0056     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2188208..2199026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM435_RS11870 (AM435_11865) pilE 2188425..2188850 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  AM435_RS11875 (AM435_11870) pilY2 2188847..2189329 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  AM435_RS11880 (AM435_11875) pilY1 2189342..2193196 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  AM435_RS11885 (AM435_11880) pilX 2193208..2194026 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AM435_RS11890 (AM435_11885) pilW 2194023..2195024 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  AM435_RS11895 (AM435_11890) pilV 2195025..2195585 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  AM435_RS11900 (AM435_11895) fimU 2195579..2196052 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AM435_RS11905 (AM435_11900) ispH 2196222..2197172 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AM435_RS11910 (AM435_11905) gmk 2197295..2197924 (+) 630 WP_000015937.1 guanylate kinase -
  AM435_RS11915 (AM435_11910) rpoZ 2197997..2198275 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AM435_RS11920 (AM435_11915) - 2198314..2198443 (+) 130 Protein_2108 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=271860 AM435_RS11885 WP_000149374.1 2193208..2194026(-) (pilX) [Acinetobacter baumannii strain AR_0056]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=271860 AM435_RS11885 WP_000149374.1 2193208..2194026(-) (pilX) [Acinetobacter baumannii strain AR_0056]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment