Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NLP_RS07350 Genome accession   NZ_CP026692
Coordinates   1713221..1714744 (+) Length   507 a.a.
NCBI ID   WP_104905825.1    Uniprot ID   A0A2L2NN71
Organism   Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1708221..1719744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLP_RS07325 (NLP_1425) - 1708713..1709327 (-) 615 WP_104905821.1 PEP-CTERM sorting domain-containing protein -
  NLP_RS07330 (NLP_1426) - 1709882..1710400 (-) 519 WP_104905822.1 DUF456 family protein -
  NLP_RS07335 (NLP_1427) - 1710556..1711470 (+) 915 WP_104905823.1 M48 family metallopeptidase -
  NLP_RS07340 (NLP_1428) - 1711585..1712244 (-) 660 WP_104905824.1 cofactor assembly of complex C subunit B -
  NLP_RS07345 (NLP_1429) - 1712322..1713050 (-) 729 WP_012412029.1 response regulator transcription factor -
  NLP_RS07350 (NLP_1430) radA 1713221..1714744 (+) 1524 WP_104905825.1 DNA repair protein RadA Machinery gene
  NLP_RS07355 (NLP_1431) - 1714861..1715589 (+) 729 WP_104905826.1 Uma2 family endonuclease -
  NLP_RS07360 (NLP_1432) - 1715881..1716075 (+) 195 WP_104905827.1 hypothetical protein -
  NLP_RS34730 - 1716137..1716229 (+) 93 WP_234017242.1 DUF2283 domain-containing protein -
  NLP_RS34735 - 1716230..1716376 (+) 147 WP_234017243.1 hypothetical protein -
  NLP_RS32920 (NLP_1434) - 1716406..1716519 (+) 114 Protein_1474 Uma2 family endonuclease -
  NLP_RS34740 - 1716484..1716645 (-) 162 WP_234017394.1 hypothetical protein -
  NLP_RS07370 (NLP_1435) - 1717004..1718248 (+) 1245 WP_104905828.1 serine/threonine-protein kinase -
  NLP_RS07375 (NLP_1436) - 1718547..1719467 (-) 921 WP_104905829.1 DUF3365 domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54309.13 Da        Isoelectric Point: 4.8738

>NTDB_id=271740 NLP_RS07350 WP_104905825.1 1713221..1714744(+) (radA) [Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183]
MAKPKTFFTCNECGAESPQWFGKCPACGTYNSLEEQISIQSSVDVPSRGGVSSWQSAQGNGKSHGKPAKARASLTFDQIT
DRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKTL
SVVSEEKVEVVDPALPIDPDSIGADLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAALM
KVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVADGLREVSNPSE
LFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGVDYNRLVQILAVLEKRVGIPMSKLDSYVASAGG
LNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPDLNIEILPV
SKVIDAIIAAIPHQELTADDLEPDEDE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=271740 NLP_RS07350 WP_104905825.1 1713221..1714744(+) (radA) [Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183]
ATGGCAAAGCCAAAAACTTTTTTCACTTGTAACGAATGTGGAGCAGAATCGCCCCAGTGGTTTGGTAAGTGTCCAGCTTG
CGGCACTTACAACTCTCTAGAAGAACAAATTTCTATTCAATCCTCAGTAGATGTGCCCAGTCGGGGGGGAGTGAGTAGTT
GGCAATCAGCTCAAGGCAATGGCAAATCTCACGGTAAACCAGCTAAAGCGCGAGCCTCTTTAACATTTGATCAAATTACC
GATCGCCAAATTGCCCGTTGGGAGTCTGGTTATGGAGAATTAGATCGAGTGCTTGGAGGTGGGGTTGTCCCTGGCTCTAT
GGTGCTGATAGGTGGCGATCCAGGTATTGGAAAATCGACTTTATTGTTGCAAGTATCTAATCAATTAGCACAGAAATACC
GCATCCTTTACGTAACTGGTGAAGAATCGGGACAGCAGGTAAAATTACGAGCTTCCCGCTTAGGAGTATCAAAAACTCTA
AGTGTAGTTAGTGAGGAGAAGGTTGAAGTAGTAGATCCCGCACTTCCTATAGACCCTGACAGTATAGGTGCTGATTTATA
TGTACTGCCAGAAACAGATTTAGAAGAAATTTTACGGGAAATAGATTCTCTAAAACCAAATGTGGCGGTGATTGATAGTA
TCCAAACGGTGTTTTTTCCGGCGCTGACTTCTGCACCAGGTTCAGTAGCTCAGGTACGTGAATGTACCGCAGCCTTGATG
AAGGTGGCAAAGCACGAAGATGTCACTATGCTGATTGTCGGACACGTTACCAAAGAAGGAGCGATCGCTGGGCCAAAAGT
TTTAGAACATTTAGTCGATACAGTGTTGTATTTTGAAGGCGATCGCTTTGCCTCCCATCGGTTATTACGGACAGTCAAAA
ACCGCTTCGGCGCAACTCACGAAATCGGCATCTTTGAAATGGTGGCAGATGGATTGCGAGAAGTCTCCAACCCCTCAGAG
CTATTTTTAGGCAACCGTGACGATCCAGCACCAGGTACGGCAATTGTCGTGGCTTGCGAAGGCACTCGCCCGATTGTTGT
AGAATTGCAGGCTTTAGTGAGTCCTACCAGCTACCCTTCCCCTCGGCGGGCTGGAACTGGCGTAGACTACAACCGTCTAG
TGCAAATTCTCGCTGTCTTAGAAAAGCGAGTGGGAATTCCGATGTCAAAGTTAGATTCCTACGTTGCTTCTGCGGGTGGG
TTAAATGTGGAAGAACCGGCGGTAGATTTAGGAATAGCGATCGCAATTGTAGCTAGTTTCCGCGATCGCATCGTCGATCC
CGGTACAGTATTAATCGGTGAAGTTGGGTTAGGTGGACAAGTGCGATCGGTTTCCCAAATGGAACTAAGGTTGAAAGAAG
CTGCTAAGTTGGGATTTAAACGAGCGATCGTGCCCAAAGGAACAAAATTCCCTGACTTGAATATTGAGATATTACCAGTA
TCTAAAGTCATAGATGCAATTATTGCCGCCATCCCCCATCAAGAATTGACAGCCGACGATTTAGAACCCGATGAAGATGA
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(401-466)

KaiC (ATPase)

(90-295)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L2NN71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.507

97.239

0.491
  radA Streptococcus mitis SK321

45.918

96.647

0.444
  radA Streptococcus mitis NCTC 12261

47.436

92.308

0.438
  radA Streptococcus pneumoniae Rx1

47.436

92.308

0.438
  radA Streptococcus pneumoniae D39

47.436

92.308

0.438
  radA Streptococcus pneumoniae R6

47.436

92.308

0.438
  radA Streptococcus pneumoniae TIGR4

47.436

92.308

0.438

Multiple sequence alignment