Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   C2I25_RS11635 Genome accession   NZ_CP026678
Coordinates   2215198..2216325 (-) Length   375 a.a.
NCBI ID   WP_106823395.1    Uniprot ID   -
Organism   Bacillus cereus strain TG1-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2210198..2221325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I25_RS11625 (C2I25_11620) gyrA 2210676..2213147 (-) 2472 WP_001282866.1 DNA gyrase subunit A -
  C2I25_RS11630 (C2I25_11625) gyrB 2213236..2215158 (-) 1923 WP_000435980.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  C2I25_RS11635 (C2I25_11630) recF 2215198..2216325 (-) 1128 WP_106823395.1 DNA replication/repair protein RecF Machinery gene
  C2I25_RS11640 (C2I25_11635) yaaA 2216338..2216550 (-) 213 WP_000680510.1 S4 domain-containing protein YaaA -
  C2I25_RS11645 (C2I25_11640) dnaN 2216678..2217823 (-) 1146 WP_001212886.1 DNA polymerase III subunit beta -
  C2I25_RS11650 (C2I25_11645) dnaA 2218003..2219343 (-) 1341 WP_000428028.1 chromosomal replication initiator protein DnaA -
  C2I25_RS11655 (C2I25_11650) rpmH 2219908..2220042 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  C2I25_RS11660 (C2I25_11655) rnpA 2220119..2220466 (+) 348 WP_000726621.1 ribonuclease P protein component -
  C2I25_RS11665 (C2I25_11660) spoIIIJ 2220519..2221286 (+) 768 WP_000727740.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43290.60 Da        Isoelectric Point: 6.7809

>NTDB_id=271657 C2I25_RS11635 WP_106823395.1 2215198..2216325(-) (recF) [Bacillus cereus strain TG1-6]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEEFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTVQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=271657 C2I25_RS11635 WP_106823395.1 2215198..2216325(-) (recF) [Bacillus cereus strain TG1-6]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAACTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGAGTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTTATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACAGTTCAACTAATTGA
GCATGGTGCAAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTAATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTACTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGATGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651

Multiple sequence alignment