Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C2I25_RS05425 Genome accession   NZ_CP026678
Coordinates   1035923..1037749 (-) Length   608 a.a.
NCBI ID   WP_106822774.1    Uniprot ID   -
Organism   Bacillus cereus strain TG1-6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1030923..1042749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I25_RS05390 (C2I25_05390) - 1031351..1032148 (-) 798 WP_106822770.1 NAD kinase -
  C2I25_RS05395 (C2I25_05395) - 1032167..1032805 (-) 639 WP_088349930.1 GTP pyrophosphokinase family protein -
  C2I25_RS05400 (C2I25_05400) - 1032836..1033207 (-) 372 WP_001180005.1 hypothetical protein -
  C2I25_RS05405 (C2I25_05405) - 1033352..1033930 (+) 579 WP_106822772.1 CYTH domain-containing protein -
  C2I25_RS05410 (C2I25_05410) - 1034099..1034497 (+) 399 WP_000043386.1 hypothetical protein -
  C2I25_RS05415 (C2I25_05415) - 1034497..1035390 (+) 894 WP_053565015.1 ClpXP adapter SpxH family protein -
  C2I25_RS28765 (C2I25_05420) - 1035620..1035793 (+) 174 WP_081366397.1 hypothetical protein -
  C2I25_RS05425 (C2I25_05425) pepF 1035923..1037749 (-) 1827 WP_106822774.1 oligoendopeptidase F Regulator
  C2I25_RS05430 (C2I25_05430) - 1037800..1039044 (-) 1245 WP_106822776.1 competence protein CoiA -
  C2I25_RS05435 (C2I25_05435) - 1039125..1040669 (-) 1545 WP_000799191.1 cardiolipin synthase -
  C2I25_RS05440 (C2I25_05440) mecA 1040742..1041425 (-) 684 WP_000350715.1 adaptor protein MecA Regulator
  C2I25_RS05445 (C2I25_05445) - 1041771..1042445 (+) 675 WP_000362612.1 TerC family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70214.54 Da        Isoelectric Point: 4.6009

>NTDB_id=271640 C2I25_RS05425 WP_106822774.1 1035923..1037749(-) (pepF) [Bacillus cereus strain TG1-6]
MSEQNKAKALPDRNEIEEASTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDPRVREDAFKAVYETYGKFKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVETVNENLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDLLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=271640 C2I25_RS05425 WP_106822774.1 1035923..1037749(-) (pepF) [Bacillus cereus strain TG1-6]
ATGTCTGAACAAAACAAAGCGAAAGCATTACCAGATCGCAACGAGATTGAAGAAGCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACGGATGCAGAATGGGAAAAAGAATTCCAGGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGGACAATTTACTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCTCATATGCGTTACGATCAAGATACAACAAACTCTGTATATCAAGCATTAAATGATCGCGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCGTATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTCTTGA
AGGAAAATAGAGATTTAAGTGTATATGAACATGCATTAGAAGAAATTACACGTCAACGCCCGCACGTATTATCAGAAGCT
GAGGAGGCTTTATTAGCGGAAGCATCTGAAGTAATGAGTTCATCAAGCAATACATTCGGTATGTTGAATAACGCGGATTT
AAAATTCCCATCTATTAAAGGTGAAGACGGAGAAGAAATAGAAATTACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCCTCGTGTTCGCGAAGATGCATTTAAAGCTGTATATGAAACGTATGGGAAATTTAAAAATACATTCGCAAGTACG
TTAAGTGGAGCAGTAAAACGTAATAATTTCAATGCGCGTGTTCGTAAATATGATTCTGCTCGCCAAGCTGCACTGAGCAA
TAATAATATTCCGGAAGCAGTATACGATCAACTCGTTGAAACGGTAAATGAAAACTTACATTTATTACACCGTTACATCG
ATATTCGTAAGCGTGCATTAGGACTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTTAAAATG
AATGTGAAATACGAAGAAGCACAAGACCTTTTATTAAAATCTTTAAACGTACTTGGTGATGAATATGTTGATATTTTGAA
AGAGGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGGGCATACTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAACTTATTTACACTTGCTCATGAGTTTGGCCATTCG
GTGCATAGTTACTATACAAGAAAAACACAACCGCACGTATATGGTGATTATTCCATCTTCGTAGCAGAAGTGGCATCAAC
TTGTAATGAAGCGCTTCTAAATGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCAGAGTTTGAACATATTATTCATAAGAAAGTACAA
GAAGGACATGCTGTTACGCCAGATATGCTAACGGAAATCTACTATGATTTAAATAAGAAATATTTCGGTGACGCTTTAGT
AATCGACGAAGAGATTGGTTTAGAATGGTCTCGTATTCCACACTTCTACTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACAGCTCTATCTAAACAGATTTTAGAAGAAGGACAACCAGCAGTAGAACGTTATATTAACGAGTTC
TTAAAAGCAGGAAGCTCTGATTATCCAATTGAAGTGCTGAAAAAAGCAGGAGTAGATATGGCATCTCCTGAACCAGTAAA
AGAGGCACTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

97.533

0.487

Multiple sequence alignment