Detailed information NTG0271592

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4Q27_RS08170
• Genome accession: NZ_CP026675
• Coordinates: 1679233..1680099 (+)
• Length: 288 a.a.
• NCBI ID: WP_104886726.1
• Uniprot ID: A0AAU8YF40
• Organism: Pseudomonas sp. SWI36
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1674233..1685099

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4Q27_RS08150 (C4Q27_08150)	ltrA	1675327..1676748 (-)	1422	WP_104886724.1	group II intron reverse transcriptase/maturase	-
C4Q27_RS08160 (C4Q27_08160)	-	1677395..1677805 (-)	411	WP_012051131.1	pilin	-
C4Q27_RS08165 (C4Q27_08165)	-	1678022..1679230 (+)	1209	WP_104886725.1	type II secretion system F family protein	-
C4Q27_RS08170 (C4Q27_08170)	pilD	1679233..1680099 (+)	867	WP_104886726.1	A24 family peptidase	Machinery gene
C4Q27_RS08175 (C4Q27_08175)	coaE	1680099..1680722 (+)	624	WP_104886727.1	dephospho-CoA kinase	-
C4Q27_RS08180 (C4Q27_08180)	yacG	1680719..1680919 (+)	201	WP_010951889.1	DNA gyrase inhibitor YacG	-
C4Q27_RS08190 (C4Q27_08190)	-	1681113..1681820 (-)	708	WP_020190540.1	energy-coupling factor ABC transporter permease	-
C4Q27_RS08195 (C4Q27_08195)	-	1681907..1682338 (+)	432	WP_064492471.1	hypothetical protein	-
C4Q27_RS08200 (C4Q27_08200)	-	1682394..1683023 (+)	630	WP_003247546.1	DUF1780 domain-containing protein	-
C4Q27_RS08205 (C4Q27_08205)	-	1683156..1683329 (+)	174	WP_008091951.1	DUF3094 domain-containing protein	-
C4Q27_RS08210 (C4Q27_08210)	-	1683414..1684709 (+)	1296	WP_003247549.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31790.86 Da
• Isoelectric Point: 8.1551

>NTDB_id=271592 C4Q27_RS08170 WP_104886726.1 1679233..1680099(+) (pilD) [Pseudomonas sp. SWI36]
MTLWALLAEQPAYFLTFATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTTQHARFDLCLPASRCPHCAHRVRA
WENIPVISYLALGGRCSSCKKRISLRYPVVEVASALLSLVVAWRFGASVEALVALPLTWCLLALSLIDADHQLLPDVLVL
PTMWLGLIVNAFGIHVALADALWGAVAGYLTLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRFRRHALGTAIPFGPYLAIAGWIAVLWGDEIYASYIQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=271592 C4Q27_RS08170 WP_104886726.1 1679233..1680099(+) (pilD) [Pseudomonas sp. SWI36]
ATGACTTTATGGGCTTTGCTGGCTGAACAGCCAGCGTACTTCCTTACTTTCGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTATCAATGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAAGAGGTATTGGGGC
TGCCGACCACGCAGCACGCGCGTTTCGACCTGTGCCTGCCCGCCTCCCGGTGCCCACACTGCGCGCACCGGGTTCGTGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAAACGCATCAGCCTGCGTTA
CCCGGTAGTGGAAGTGGCCAGCGCGCTGCTGTCGCTGGTAGTGGCCTGGCGCTTCGGCGCTTCGGTAGAGGCGTTGGTGG
CTCTGCCGCTGACCTGGTGCCTGCTGGCGCTGAGCCTGATCGATGCGGACCACCAGCTGCTGCCGGATGTGCTGGTGCTG
CCGACCATGTGGCTAGGGCTGATCGTCAATGCCTTTGGTATCCATGTGGCCCTGGCCGATGCCCTGTGGGGCGCAGTGGC
CGGGTATCTCACCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCATGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCG
CTTGTTGGCCTGTGCCTGCTGCGTTTTCGCCGGCATGCCTTGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATACAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.903	96.181	0.49
pilD	Acinetobacter baumannii D1279779	48.754	97.569	0.476
pilD	Acinetobacter nosocomialis M2	48.043	97.569	0.469
pilD	Vibrio campbellii strain DS40M4	48.727	95.486	0.465
pilD	Neisseria gonorrhoeae MS11	46.84	93.403	0.437