Detailed information NTG0271580

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4Q26_RS15575
• Genome accession: NZ_CP026674
• Coordinates: 3290802..3291668 (-)
• Length: 288 a.a.
• NCBI ID: WP_023382439.1
• Uniprot ID: A0A964GN15
• Organism: Pseudomonas sp. SWI44
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3285802..3296668

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4Q26_RS15545 (C4Q26_15545)	-	3286742..3288037 (-)	1296	WP_104883271.1	NAD(P)/FAD-dependent oxidoreductase	-
C4Q26_RS15550 (C4Q26_15550)	-	3288122..3288295 (-)	174	WP_012316344.1	DUF3094 domain-containing protein	-
C4Q26_RS15555 (C4Q26_15555)	-	3288428..3289057 (-)	630	WP_023382443.1	DUF1780 domain-containing protein	-
C4Q26_RS15560 (C4Q26_15560)	-	3289196..3289846 (+)	651	WP_256583406.1	energy-coupling factor ABC transporter permease	-
C4Q26_RS15565 (C4Q26_15565)	yacG	3289982..3290182 (-)	201	WP_023382441.1	DNA gyrase inhibitor YacG	-
C4Q26_RS15570 (C4Q26_15570)	coaE	3290179..3290802 (-)	624	WP_023382440.1	dephospho-CoA kinase	-
C4Q26_RS15575 (C4Q26_15575)	pilD	3290802..3291668 (-)	867	WP_023382439.1	A24 family peptidase	Machinery gene
C4Q26_RS15580 (C4Q26_15580)	-	3291671..3292879 (-)	1209	WP_104883273.1	type II secretion system F family protein	-
C4Q26_RS15585 (C4Q26_15585)	-	3293094..3293504 (+)	411	WP_023382437.1	pilin	-
C4Q26_RS15595 (C4Q26_15595)	-	3293813..3295135 (+)	1323	WP_158664892.1	integrase arm-type DNA-binding domain-containing protein	-
C4Q26_RS15605 (C4Q26_15605)	-	3296032..3296343 (+)	312	Protein_3036	integrase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31781.18 Da
• Isoelectric Point: 8.1737

>NTDB_id=271580 C4Q26_RS15575 WP_023382439.1 3290802..3291668(-) (pilD) [Pseudomonas sp. SWI44]
MTLWTFLAAQPAYLMTLAALLGLLVGSFLNVLVHRLPIMLERQWQREAQQVLGLPTSVHERFDLCLPASRCPGCGHPIRA
WENIPVLSYLALRGRCSACKCRISPRYPLVELACAAVSLVVAWHGGSAAQLLLLLLLTWCLLALSLIDIEHQLLPDVLVL
PMLWLGLIANAFHTFVPLSHALWGAIAGYLCLWSVYWVFKLLTGKEGMGYGDFKLLALIGAWGGWQVLPLTLLLSSVLGV
LVGLCLLRVRRQSLSTTLPFGPYLAIAGWIALLWGDEIYASYMQLLGL

Nucleotide

• Length: 867 bp

>NTDB_id=271580 C4Q26_RS15575 WP_023382439.1 3290802..3291668(-) (pilD) [Pseudomonas sp. SWI44]
ATGACTTTATGGACTTTCCTGGCTGCGCAGCCGGCTTACCTGATGACCTTGGCCGCCCTCCTGGGGTTGCTGGTCGGCAG
CTTTCTGAACGTGTTGGTACACCGCCTGCCGATCATGCTCGAACGCCAATGGCAGCGCGAAGCACAGCAGGTGCTGGGGC
TGCCGACGTCGGTGCATGAACGCTTCGACCTGTGCCTGCCTGCCTCCCGCTGCCCGGGCTGCGGGCACCCGATTCGTGCC
TGGGAAAACATCCCGGTGCTGAGTTACCTGGCCCTGCGTGGGCGCTGCTCGGCGTGCAAGTGCCGCATCAGCCCGCGTTA
TCCACTGGTGGAGCTGGCGTGCGCGGCCGTTTCGCTGGTAGTGGCGTGGCATGGCGGCAGTGCCGCGCAGCTGCTGTTGC
TACTGTTGCTCACCTGGTGCCTGCTGGCCTTGAGCCTGATCGATATCGAACACCAGTTGCTGCCCGACGTGCTGGTGCTG
CCAATGCTGTGGCTAGGCTTGATCGCCAATGCCTTCCACACCTTCGTACCCCTGAGCCATGCGCTGTGGGGCGCGATTGC
GGGTTACCTCTGCCTGTGGAGCGTGTACTGGGTGTTCAAGCTGCTGACCGGCAAGGAGGGCATGGGCTATGGGGACTTCA
AGCTGCTGGCGTTGATCGGCGCCTGGGGCGGGTGGCAGGTGCTGCCGCTGACCTTGCTGTTGTCATCGGTGCTGGGGGTG
CTGGTTGGCCTGTGCCTGCTGCGTGTGCGTCGGCAATCGCTGAGTACGACGTTGCCGTTCGGGCCTTATCTGGCCATTGC
AGGGTGGATTGCGTTGCTCTGGGGTGATGAAATATACGCCTCTTACATGCAACTACTGGGACTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.945	94.792	0.521
pilD	Acinetobacter baumannii D1279779	51.493	93.056	0.479
pilD	Vibrio campbellii strain DS40M4	49.64	96.528	0.479
pilD	Acinetobacter nosocomialis M2	50.746	93.056	0.472
pilD	Neisseria gonorrhoeae MS11	47.955	93.403	0.448