Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4Q26_RS04480 Genome accession   NZ_CP026674
Coordinates   908354..910591 (-) Length   745 a.a.
NCBI ID   WP_104882816.1    Uniprot ID   -
Organism   Pseudomonas sp. SWI44     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 903354..915591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4Q26_RS04445 (C4Q26_04445) murB 903689..904708 (-) 1020 WP_104882815.1 UDP-N-acetylmuramate dehydrogenase -
  C4Q26_RS04450 (C4Q26_04450) - 904705..905169 (-) 465 WP_104882033.1 low molecular weight protein-tyrosine-phosphatase -
  C4Q26_RS04455 (C4Q26_04455) kdsB 905169..905933 (-) 765 WP_027907743.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4Q26_RS04460 (C4Q26_04460) - 905930..906115 (-) 186 WP_003247142.1 Trm112 family protein -
  C4Q26_RS04465 (C4Q26_04465) lpxK 906160..907161 (-) 1002 WP_023379396.1 tetraacyldisaccharide 4'-kinase -
  C4Q26_RS04470 (C4Q26_04470) - 907161..907595 (-) 435 WP_023379395.1 biopolymer transporter ExbD -
  C4Q26_RS04475 (C4Q26_04475) exbB 907592..908227 (-) 636 WP_023379394.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4Q26_RS04480 (C4Q26_04480) comA 908354..910591 (-) 2238 WP_104882816.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4Q26_RS04485 (C4Q26_04485) - 910734..911240 (+) 507 Protein_875 DUF2062 domain-containing protein -
  C4Q26_RS04490 (C4Q26_04490) - 911250..912029 (-) 780 WP_104882817.1 ABC transporter permease -
  C4Q26_RS04495 (C4Q26_04495) - 912026..912958 (-) 933 WP_023379389.1 ABC transporter ATP-binding protein -
  C4Q26_RS04500 (C4Q26_04500) - 913091..913714 (-) 624 WP_104882818.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 80522.50 Da        Isoelectric Point: 10.4487

>NTDB_id=271568 C4Q26_RS04480 WP_104882816.1 908354..910591(-) (comA) [Pseudomonas sp. SWI44]
MRKGMLALAIGLLCLGFLPALPSVGWLLLLLCCGLGCLCVRWWSVACFLLGVCWACWSAQQALDDRLAPQLDGRTLWLEG
RVVGLPTRTAQGVRFELSQPLSRRAELPTRLQLSWFDGPPLRAGEHWRLAVTLQRPTGLLNPHGPDREASLLARRIGATG
TVKAGEKLSSVAGSWRDQLRQRLLAVQAQGREAALVALVLGDGAALARDDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPHRQPWLPWACGLAMAAALGYGGLAGWGVPVQRACLMLAVVLAWRLRFRHIGSGIPLLLALIAVLLFEPL
AALLPGFWLSFAAVAVLIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLFAVPLISLTVLPLAL
LGTLLLPLGSVGEGLLWLAGGLLELLFWLLGKVAGWRSAWMPAALPLWAWLLVAGGALLVLLPRGVPLRGLGGVMLLALW
VPPEQVSQGQVEVWQLDVGQGLAVLLRTRTHSLLYDAGPARGDSDLGEWVVLPTLRKLGVSRLDMMLISHAHADHAGGAQ
AVARGLPIGRLLAGEAQALSGAQPCVSDERWEWDGVRFSLWRWPEAQGSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AASEQPDIDWLQSPHHGSRTSSTEAFIKATKPRGVLISRGRNNGFGHPHPQVIERYRRHGVVIHDTAVEGALRLRLGHRG
GVEGLRAQRRFWRAAAPSPSSQVPR

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=271568 C4Q26_RS04480 WP_104882816.1 908354..910591(-) (comA) [Pseudomonas sp. SWI44]
ATGCGCAAAGGGATGCTTGCGCTCGCCATTGGGCTGTTGTGCCTGGGGTTTCTGCCGGCCTTGCCGTCGGTCGGCTGGCT
TTTGCTGCTTCTGTGCTGTGGCTTGGGCTGCCTGTGTGTTCGGTGGTGGTCGGTCGCCTGTTTTCTGCTGGGCGTGTGCT
GGGCCTGCTGGTCGGCCCAGCAGGCCCTGGATGATCGGTTGGCGCCGCAGCTCGATGGCCGTACGTTATGGCTGGAGGGC
AGGGTGGTCGGGTTGCCGACTCGCACCGCGCAAGGCGTGCGTTTTGAGTTGTCGCAGCCACTCTCGCGCCGAGCCGAGTT
ACCGACCCGTCTGCAACTGAGCTGGTTCGACGGTCCGCCGCTGCGCGCGGGCGAACACTGGCGTCTGGCCGTCACCTTGC
AGCGCCCGACAGGCTTGCTCAACCCCCATGGTCCGGACCGCGAGGCAAGCCTGTTGGCCCGACGGATCGGCGCAACCGGC
ACGGTCAAGGCCGGCGAGAAGCTGTCGTCCGTAGCGGGCAGTTGGCGCGACCAACTGCGTCAGCGGCTGCTCGCGGTCCA
GGCACAGGGCCGTGAAGCCGCGCTGGTTGCCTTGGTGTTGGGCGATGGAGCGGCATTGGCCCGGGACGATTGGCAAACCC
TGCAGGCCACGGGCACGGTGCACTTGCTGGTCATCTCCGGGCAACACATCGGTCTGGTGGCCGGCCTGCTGTACGGGTTG
GTCGCCGGGCTGGCGCGCTGGGGGCTCTGGCCTCATCGCCAGCCTTGGCTGCCGTGGGCCTGTGGCCTGGCCATGGCGGC
GGCGCTGGGGTATGGCGGGCTGGCGGGGTGGGGCGTGCCGGTGCAGCGAGCCTGCTTGATGTTGGCCGTGGTACTGGCCT
GGCGCCTGCGCTTCCGCCACATCGGTTCCGGGATACCCTTGCTGTTGGCGCTCATCGCGGTGCTGTTGTTCGAGCCATTG
GCTGCGTTGTTGCCCGGGTTCTGGTTGTCTTTCGCCGCGGTGGCCGTACTCATTTACTGCTTCAGCGCACGTCTGGGTGG
CTGGCGACCCTGGCAAGCCTGGACCCGTGCGCAGTGGGTAATCGCCATTGGCCTGCTGCCAGTGTTGCTCGCCACAGGGC
TGCCGGTCAGCCTGAGTGCGCCCCTGGCCAACCTCTTTGCAGTGCCCTTGATCAGCCTGACGGTGTTGCCGCTGGCGTTG
CTCGGCACGCTGCTGCTGCCATTGGGCAGTGTGGGCGAGGGCTTGCTGTGGCTGGCGGGTGGCTTGTTGGAGCTGCTCTT
CTGGCTTTTGGGCAAGGTGGCGGGTTGGCGTTCTGCCTGGATGCCCGCTGCATTGCCCCTGTGGGCATGGCTGTTGGTGG
CGGGCGGGGCACTGCTGGTGTTGTTGCCCAGAGGCGTGCCACTGCGTGGCTTGGGTGGGGTGATGCTGCTGGCCTTGTGG
GTACCGCCAGAGCAGGTGTCGCAGGGGCAGGTGGAGGTCTGGCAATTGGATGTCGGCCAAGGGTTGGCGGTACTGCTGCG
AACCCGAACCCACAGCCTTCTGTACGATGCAGGGCCAGCACGCGGTGACAGTGACCTGGGTGAATGGGTGGTGCTGCCGA
CCCTGCGCAAGCTGGGGGTGAGCCGCCTGGACATGATGCTGATCAGCCATGCCCATGCCGACCACGCCGGTGGCGCGCAG
GCTGTGGCGCGCGGGTTGCCCATCGGGCGCCTGCTGGCGGGAGAGGCACAGGCGCTGTCTGGAGCGCAGCCCTGCGTCAG
CGATGAGCGCTGGGAATGGGATGGCGTGCGCTTTTCGCTGTGGCGATGGCCCGAGGCGCAAGGCAGCAATGACCGCTCTT
GCGTGCTACTGGTCGAGGCGCAAGGCGAGCGGCTGCTTTTGGCGGGTGACATGGAGGCGGGTGCCGAGCGTGCCTGGCTG
GCCGCCAGCGAGCAGCCCGACATCGACTGGTTGCAATCGCCCCATCACGGTAGCCGCACGTCGTCCACCGAGGCTTTCAT
CAAGGCCACCAAGCCGCGTGGCGTGTTGATTTCGCGAGGGCGCAACAATGGGTTTGGCCATCCGCACCCGCAGGTGATCG
AACGCTACCGGCGCCATGGCGTGGTGATTCATGATACGGCGGTGGAGGGGGCATTGCGCTTGCGCCTGGGGCATCGCGGT
GGGGTAGAGGGCCTGCGTGCGCAGCGGCGTTTCTGGCGTGCGGCAGCCCCCTCGCCATCCAGCCAGGTACCGCGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-676)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.357

96.376

0.562
  comA Ralstonia pseudosolanacearum GMI1000

35.907

100

0.374

Multiple sequence alignment