Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   D0R13_RS05995 Genome accession   NZ_CP031833
Coordinates   1159344..1160081 (-) Length   245 a.a.
NCBI ID   WP_001556171.1    Uniprot ID   -
Organism   Escherichia coli strain 2452     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1154344..1165081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0R13_RS05965 tyrA 1154718..1155839 (+) 1122 WP_094319418.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  D0R13_RS05970 pheA 1155882..1157042 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  D0R13_RS05975 pheL 1157141..1157188 (-) 48 WP_010723158.1 phe operon leader peptide -
  D0R13_RS05980 raiA 1157292..1157633 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  D0R13_RS05990 - 1157894..1159240 (-) 1347 WP_000483767.1 IS4-like element IS4 family transposase -
  D0R13_RS05995 comL 1159344..1160081 (-) 738 WP_001556171.1 outer membrane protein assembly factor BamD Machinery gene
  D0R13_RS06000 rluD 1160216..1161196 (+) 981 WP_063119148.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D0R13_RS06005 yfiH 1161193..1161924 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  D0R13_RS06010 clpC 1162054..1164627 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27857.45 Da        Isoelectric Point: 6.4874

>NTDB_id=271380 D0R13_RS05995 WP_001556171.1 1159344..1160081(-) (comL) [Escherichia coli strain 2452]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYVYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=271380 D0R13_RS05995 WP_001556171.1 1159344..1160081(-) (comL) [Escherichia coli strain 2452]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGTCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371

Multiple sequence alignment