Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D0819_RS06685 Genome accession   NZ_CP031784
Coordinates   1305947..1306591 (-) Length   214 a.a.
NCBI ID   WP_046559696.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1300947..1311591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS06660 (D0819_06685) rapC 1301072..1302208 (+) 1137 WP_153256882.1 Rap family tetratricopeptide repeat protein Regulator
  D0819_RS06665 (D0819_06690) - 1302198..1302374 (+) 177 WP_019712878.1 hypothetical protein -
  D0819_RS06670 (D0819_06695) - 1302385..1302996 (-) 612 Protein_1326 UV damage repair protein UvrX -
  D0819_RS06675 (D0819_06700) - 1302981..1304411 (-) 1431 WP_153256884.1 MBL fold metallo-hydrolase -
  D0819_RS06680 (D0819_06705) - 1304570..1305769 (-) 1200 WP_153256885.1 FAD/NAD(P)-binding oxidoreductase -
  D0819_RS06685 (D0819_06710) vraR 1305947..1306591 (-) 645 WP_046559696.1 response regulator transcription factor Regulator
  D0819_RS06690 (D0819_06715) - 1306584..1307657 (-) 1074 WP_153256886.1 PAS domain-containing sensor histidine kinase -
  D0819_RS06695 (D0819_06720) - 1308111..1308890 (-) 780 WP_153256887.1 sulfite exporter TauE/SafE family protein -
  D0819_RS06700 (D0819_06725) - 1309491..1309847 (-) 357 WP_072566416.1 hypothetical protein -
  D0819_RS06705 (D0819_06730) yolA 1309853..1310320 (-) 468 WP_103032196.1 YolA family protein -
  D0819_RS06710 - 1310561..1310641 (+) 81 WP_153257370.1 putative holin-like toxin -
  D0819_RS06715 (D0819_06735) - 1310953..1311411 (-) 459 WP_071581355.1 YrhA family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24417.58 Da        Isoelectric Point: 6.6535

>NTDB_id=271254 D0819_RS06685 WP_046559696.1 1305947..1306591(-) (vraR) [Bacillus subtilis strain HMNig-2]
MIRVLLVDDHTMIRKGLRVLLEGYPEIKIVGESHNGNDAILKTRQLKPDVVLMDLSMPTGLDGFTASSEILKLNLPVKII
ILTMYDEEIFVQKAIEVGAYGYILKNSHYELLYKAIVEVSLGKLFYKTSVSQEILSQWMTSESKKISSVLTVREKEIVRL
IVLGYTNKEIANELSISFKTVENHKTNIMQKLELDSKHELIQYAINNNYLDLTL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=271254 D0819_RS06685 WP_046559696.1 1305947..1306591(-) (vraR) [Bacillus subtilis strain HMNig-2]
GTGATTAGGGTATTGTTGGTCGATGACCATACAATGATTCGAAAGGGTCTCCGTGTGCTTTTGGAAGGCTATCCTGAAAT
CAAAATTGTTGGGGAAAGCCATAATGGGAATGATGCGATCCTTAAGACAAGACAGTTGAAACCGGATGTGGTGTTGATGG
ATTTGTCGATGCCAACTGGATTGGATGGATTTACAGCAAGCAGTGAAATCCTTAAATTGAATCTACCGGTTAAAATCATC
ATTTTAACTATGTATGATGAAGAGATATTTGTCCAAAAAGCAATCGAAGTAGGGGCTTATGGATACATTTTAAAGAACAG
CCATTACGAACTGCTTTATAAAGCGATAGTCGAGGTTTCCTTAGGGAAACTCTTTTACAAGACATCTGTATCACAAGAGA
TTCTCTCTCAATGGATGACATCAGAATCTAAAAAGATTTCTTCTGTTTTAACAGTTCGAGAAAAGGAGATTGTTAGATTA
ATAGTACTGGGCTATACAAATAAAGAGATTGCTAATGAGCTATCGATTAGCTTCAAAACCGTGGAAAACCATAAGACGAA
TATTATGCAGAAGTTAGAACTGGATTCGAAACATGAATTGATTCAATATGCGATCAATAACAACTATTTGGATCTTACAT
TGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.619

98.131

0.369