Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D0819_RS06660 Genome accession   NZ_CP031784
Coordinates   1301072..1302208 (+) Length   378 a.a.
NCBI ID   WP_153256882.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1296072..1307208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS06630 (D0819_06655) - 1297251..1297640 (+) 390 WP_153256879.1 hypothetical protein -
  D0819_RS06635 (D0819_06660) - 1297641..1297790 (+) 150 WP_120028283.1 XkdX family protein -
  D0819_RS06640 (D0819_06665) - 1298015..1298833 (+) 819 Protein_1319 hypothetical protein -
  D0819_RS21585 - 1298813..1299049 (+) 237 WP_174616783.1 hypothetical protein -
  D0819_RS06645 (D0819_06670) blyA 1299073..1300176 (+) 1104 WP_153256880.1 N-acetylmuramoyl-L-alanine amidase BlyA -
  D0819_RS06650 (D0819_06675) - 1300279..1300671 (+) 393 WP_099043159.1 hypothetical protein -
  D0819_RS06655 (D0819_06680) - 1300693..1300944 (+) 252 WP_153256881.1 phage holin -
  D0819_RS06660 (D0819_06685) rapC 1301072..1302208 (+) 1137 WP_153256882.1 Rap family tetratricopeptide repeat protein Regulator
  D0819_RS06665 (D0819_06690) - 1302198..1302374 (+) 177 WP_019712878.1 hypothetical protein -
  D0819_RS06670 (D0819_06695) - 1302385..1302996 (-) 612 Protein_1326 UV damage repair protein UvrX -
  D0819_RS06675 (D0819_06700) - 1302981..1304411 (-) 1431 WP_153256884.1 MBL fold metallo-hydrolase -
  D0819_RS06680 (D0819_06705) - 1304570..1305769 (-) 1200 WP_153256885.1 FAD/NAD(P)-binding oxidoreductase -
  D0819_RS06685 (D0819_06710) vraR 1305947..1306591 (-) 645 WP_046559696.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44907.12 Da        Isoelectric Point: 5.0660

>NTDB_id=271253 D0819_RS06660 WP_153256882.1 1301072..1302208(+) (rapC) [Bacillus subtilis strain HMNig-2]
MEQMISSSKVGVKINEWYKYIRLFSVPDSEILKAEVEEEIRHMKEDQDLLLYYSLMCFRHQLMLDYLEPKTLNEERPKIS
DLLEKIESSQTDLKGILEYYFNFFRGMYEFEQYEYLNAISFYKQAERKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIDSYKAHENYTVRVIQCSFVIGLNYLDMDYPEKAIPHFKDALDKAREIDMSRLIGSSLYNLGLCSFAEEAYEKAS
EYFKEGIRVYQDNGYEHSNRILDILLMLTKTTFKMRNHSEGISWYAHGLSLSKNLNDEIMAKMFEFIHALYVDNDNEKLN
SILNYLELKSMLSDVEDLASDAAKYYNEKEDHKVAVAYYEKVLYARKQIQRGDCLYET

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=271253 D0819_RS06660 WP_153256882.1 1301072..1302208(+) (rapC) [Bacillus subtilis strain HMNig-2]
TTGGAGCAGATGATCTCTTCTTCTAAAGTTGGAGTGAAAATAAATGAGTGGTATAAATACATAAGATTATTTAGTGTCCC
AGATTCGGAAATATTGAAAGCTGAGGTCGAGGAAGAAATAAGGCATATGAAAGAAGATCAAGATTTATTGCTGTACTATT
CTCTCATGTGTTTTCGCCATCAGCTGATGCTGGACTACCTTGAACCAAAAACATTGAACGAAGAACGACCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGTAGTCAAACTGATTTGAAAGGGATTCTTGAATATTATTTTAACTTTTTCCGGGGAAT
GTATGAATTTGAACAATACGAATATCTTAATGCCATAAGCTTCTATAAGCAAGCCGAGAGAAAATTATCACTTGTTGCAG
ATGAAATTGAAAGAGCTGAATTCCACTATAAAGTTGCAGAAATTTATTATCATATGAAGCAAACACATATGTCGATGCAC
CACATTGTTCAAGCAATCGATAGTTATAAAGCACATGAAAACTACACTGTAAGAGTTATTCAATGCTCATTTGTTATCGG
ACTGAACTATTTGGATATGGACTACCCTGAAAAAGCGATCCCTCATTTTAAAGATGCTCTAGATAAAGCAAGAGAAATCG
ATATGTCACGATTAATCGGATCATCTCTTTACAATCTCGGCTTATGTTCCTTTGCTGAGGAAGCTTATGAAAAGGCATCT
GAGTACTTCAAGGAGGGCATTAGAGTATATCAGGATAATGGGTATGAACATTCAAATCGCATATTAGATATCTTACTTAT
GTTGACAAAAACCACTTTTAAAATGAGAAATCACTCCGAGGGAATTTCTTGGTATGCACACGGTCTGTCTTTGTCCAAAA
ATTTAAACGATGAGATTATGGCAAAAATGTTTGAATTCATTCATGCCTTATATGTAGATAATGACAATGAAAAATTAAAT
TCAATTCTAAATTATTTAGAATTAAAGTCAATGCTTTCAGACGTGGAGGATTTAGCATCAGATGCAGCGAAGTATTACAA
TGAAAAAGAAGACCATAAAGTGGCTGTTGCTTATTATGAAAAAGTGCTTTATGCCCGTAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAACTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(343-367)

Tetratricopeptide repeat (TPR_8)

(222-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.031

100

0.484
  rapF Bacillus subtilis subsp. subtilis str. 168

45.789

100

0.46