Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   D0819_RS03410 Genome accession   NZ_CP031784
Coordinates   620685..621710 (+) Length   341 a.a.
NCBI ID   WP_153256740.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 615685..626710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS03375 (D0819_03385) ylbE 615985..616224 (+) 240 WP_003232231.1 YlbE-like family protein -
  D0819_RS03380 (D0819_03390) ylbF 616340..616789 (+) 450 WP_153256738.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  D0819_RS03385 (D0819_03395) ylbG 616844..617116 (+) 273 WP_009967171.1 YlbG family protein -
  D0819_RS03390 (D0819_03400) rsmD 617439..617993 (+) 555 WP_124073195.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  D0819_RS03395 (D0819_03405) coaD 617998..618483 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  D0819_RS03400 (D0819_03410) spoVV 618494..619720 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  D0819_RS03405 (D0819_03415) ylbK 619901..620683 (+) 783 WP_153256739.1 patatin family protein -
  D0819_RS03410 (D0819_03420) sepM 620685..621710 (+) 1026 WP_153256740.1 protease DdcP Regulator
  D0819_RS03415 (D0819_03425) tmcAL 621727..622974 (-) 1248 WP_153256741.1 nucleotidyltransferase -
  D0819_RS03420 (D0819_03430) - 622971..623156 (-) 186 WP_003232215.1 hypothetical protein -
  D0819_RS03425 (D0819_03435) ylbN 623184..623702 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  D0819_RS03430 (D0819_03440) rpmF 623724..623903 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  D0819_RS03435 (D0819_03445) gerR 624049..624630 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  D0819_RS03440 (D0819_03450) ylbP 624687..625169 (-) 483 WP_014476736.1 N-acetyltransferase -
  D0819_RS03445 (D0819_03455) panEA 625329..626225 (+) 897 WP_021479342.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37637.21 Da        Isoelectric Point: 6.5347

>NTDB_id=271233 D0819_RS03410 WP_153256740.1 620685..621710(+) (sepM) [Bacillus subtilis strain HMNig-2]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKV
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=271233 D0819_RS03410 WP_153256740.1 620685..621710(+) (sepM) [Bacillus subtilis strain HMNig-2]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGGTT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.857

100

0.399