Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   D0819_RS03380 Genome accession   NZ_CP031784
Coordinates   616340..616789 (+) Length   149 a.a.
NCBI ID   WP_153256738.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 611340..621789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS03340 (D0819_03350) ctaE 611358..611981 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  D0819_RS03345 (D0819_03355) ctaF 611984..612316 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  D0819_RS03350 (D0819_03360) ctaG 612343..613236 (+) 894 WP_153256737.1 cytochrome c oxidase assembly factor CtaG -
  D0819_RS03355 (D0819_03365) ylbA 613268..613630 (-) 363 WP_003232238.1 YugN family protein -
  D0819_RS03360 (D0819_03370) ylbB 613770..614216 (+) 447 WP_003221362.1 CBS domain-containing protein -
  D0819_RS03365 (D0819_03375) ylbC 614300..615340 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  D0819_RS03370 (D0819_03380) ylbD 615571..615969 (+) 399 WP_003232233.1 YlbD family protein -
  D0819_RS03375 (D0819_03385) ylbE 615985..616224 (+) 240 WP_003232231.1 YlbE-like family protein -
  D0819_RS03380 (D0819_03390) ylbF 616340..616789 (+) 450 WP_153256738.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  D0819_RS03385 (D0819_03395) ylbG 616844..617116 (+) 273 WP_009967171.1 YlbG family protein -
  D0819_RS03390 (D0819_03400) rsmD 617439..617993 (+) 555 WP_124073195.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  D0819_RS03395 (D0819_03405) coaD 617998..618483 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  D0819_RS03400 (D0819_03410) spoVV 618494..619720 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  D0819_RS03405 (D0819_03415) ylbK 619901..620683 (+) 783 WP_153256739.1 patatin family protein -
  D0819_RS03410 (D0819_03420) sepM 620685..621710 (+) 1026 WP_153256740.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16956.04 Da        Isoelectric Point: 4.9284

>NTDB_id=271232 D0819_RS03380 WP_153256738.1 616340..616789(+) (ylbF) [Bacillus subtilis strain HMNig-2]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCVGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=271232 D0819_RS03380 WP_153256738.1 616340..616789(+) (ylbF) [Bacillus subtilis strain HMNig-2]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGTAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

99.329

100

0.993