Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D0819_RS00400 Genome accession   NZ_CP031784
Coordinates   58734..59381 (+) Length   215 a.a.
NCBI ID   WP_038829243.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 53734..64381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS00385 (D0819_00385) glpD 53905..55572 (+) 1668 WP_003233382.1 glycerol-3-phosphate dehydrogenase -
  D0819_RS00390 (D0819_00390) pgcA 55704..57449 (+) 1746 WP_153256638.1 phosphoglucomutase -
  D0819_RS00395 (D0819_00395) yhcY 57598..58737 (+) 1140 WP_077670557.1 two-component system sensor histidine kinase YhcY -
  D0819_RS00400 (D0819_00400) vraR 58734..59381 (+) 648 WP_038829243.1 two-component system response regulator YhcZ Regulator
  D0819_RS00405 (D0819_00405) yhdA 59378..59902 (+) 525 WP_153256639.1 FMN-dependent NADPH-azoreductase -
  D0819_RS00410 (D0819_00410) yhdB 59917..60159 (-) 243 WP_003233373.1 YhdB family protein -
  D0819_RS00415 (D0819_00415) yhdC 60360..60683 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  D0819_RS00420 (D0819_00420) lytF 60725..62185 (-) 1461 WP_038829247.1 peptidoglycan endopeptidase LytF -
  D0819_RS00425 (D0819_00425) nsrR 62338..62778 (-) 441 WP_014476271.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24175.86 Da        Isoelectric Point: 6.3034

>NTDB_id=271202 D0819_RS00400 WP_038829243.1 58734..59381(+) (vraR) [Bacillus subtilis strain HMNig-2]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEILK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=271202 D0819_RS00400 WP_038829243.1 58734..59381(+) (vraR) [Bacillus subtilis strain HMNig-2]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
TAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395

Multiple sequence alignment