Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PING_RS17150 Genome accession   NC_008709
Coordinates   4106700..4107572 (-) Length   290 a.a.
NCBI ID   WP_011771564.1    Uniprot ID   A1SZU7
Organism   Psychromonas ingrahamii 37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4101700..4112572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PING_RS17130 (Ping_3320) - 4103468..4104151 (-) 684 WP_011771559.1 hypothetical protein -
  PING_RS17135 (Ping_3321) - 4104202..4104948 (-) 747 WP_011771560.1 HEAT repeat domain-containing protein -
  PING_RS21155 (Ping_3322) - 4105409..4105579 (+) 171 WP_011771561.1 hypothetical protein -
  PING_RS17140 (Ping_3323) def 4105586..4106134 (+) 549 WP_011771562.1 peptide deformylase -
  PING_RS17145 (Ping_3324) tadA 4106170..4106700 (-) 531 WP_011771563.1 tRNA adenosine(34) deaminase TadA -
  PING_RS17150 (Ping_3325) pilD 4106700..4107572 (-) 873 WP_011771564.1 A24 family peptidase Machinery gene
  PING_RS17155 (Ping_3326) ndk 4107597..4108031 (-) 435 WP_011771565.1 nucleoside-diphosphate kinase -
  PING_RS17160 (Ping_3327) - 4108110..4108988 (+) 879 WP_011771566.1 endonuclease/exonuclease/phosphatase family protein -
  PING_RS17165 (Ping_3328) - 4109152..4111323 (-) 2172 WP_041766659.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32426.61 Da        Isoelectric Point: 6.0826

>NTDB_id=27118 PING_RS17150 WP_011771564.1 4106700..4107572(-) (pilD) [Psychromonas ingrahamii 37]
MNDIVILLEYSPPYLYGIVTILGLLIGSFLNVVIYRLPVMMEREWKAECADSFPDVNINIEPDTFNLVLPHSRCPSCHHL
IGPTENIPVISWLLQKGRCKHCSCKISKRYPSIELLTAMLSLAVAYLVPFGWPLLFALVFTWVLISLTFIDFDTMLLPDN
LTLPLLWLGLLINISGTFTDISSAVLGAIFGYLTLWSIYWGFKIVTGKEGMGYGDFKLLAALGAWFGWQALPLIILLSSF
SGAIIGIAIMLASKDKQSRPMPFGPYLAVAGWLFLVYGDRLTEIYYSLVL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=27118 PING_RS17150 WP_011771564.1 4106700..4107572(-) (pilD) [Psychromonas ingrahamii 37]
ATGAATGATATTGTCATCTTGTTAGAGTATTCCCCTCCATACCTTTACGGGATAGTCACTATTCTGGGCTTGTTGATAGG
TTCATTTTTAAATGTTGTTATCTATCGTTTGCCTGTGATGATGGAGCGGGAATGGAAAGCGGAATGTGCGGACTCTTTTC
CCGATGTCAATATCAATATTGAGCCAGATACCTTTAATCTTGTCTTACCTCATTCGCGTTGTCCAAGCTGTCATCATTTG
ATAGGTCCAACGGAAAATATCCCGGTGATCAGCTGGTTGTTACAAAAGGGACGCTGTAAGCATTGTAGCTGTAAAATCAG
CAAACGTTATCCAAGTATTGAATTATTAACCGCTATGCTGTCCTTGGCTGTTGCTTATCTGGTACCGTTTGGCTGGCCAT
TATTATTTGCTTTAGTCTTTACCTGGGTATTAATCAGCCTGACTTTTATTGATTTTGATACGATGTTATTACCCGATAAC
CTGACGCTGCCGTTATTGTGGTTAGGTCTATTAATCAATATTTCCGGCACTTTTACCGATATAAGCAGTGCGGTATTAGG
CGCCATCTTTGGTTATTTAACACTTTGGTCTATCTATTGGGGATTTAAAATTGTCACCGGCAAAGAGGGAATGGGATATG
GTGATTTTAAATTATTGGCGGCTTTAGGGGCGTGGTTCGGCTGGCAGGCATTACCGCTTATTATTTTACTTTCTTCTTTT
TCCGGGGCAATTATCGGTATTGCCATTATGTTAGCCTCCAAGGATAAACAGAGTCGGCCAATGCCCTTTGGTCCCTATCT
TGCCGTTGCGGGGTGGTTATTTCTGGTTTACGGGGATAGGTTAACTGAAATCTATTATTCACTGGTTTTATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1SZU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.319

97.241

0.538
  pilD Acinetobacter nosocomialis M2

52.281

98.276

0.514
  pilD Acinetobacter baumannii D1279779

52.281

98.276

0.514
  pilD Vibrio campbellii strain DS40M4

51.228

98.276

0.503
  pilD Neisseria gonorrhoeae MS11

47.687

96.897

0.462

Multiple sequence alignment