Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   D0808_RS10705 Genome accession   NZ_CP031783
Coordinates   2057937..2058959 (+) Length   340 a.a.
NCBI ID   WP_153256006.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2052937..2063959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS10670 (D0808_10760) ylbE 2053237..2053476 (+) 240 WP_003232231.1 YlbE-like family protein -
  D0808_RS10675 (D0808_10765) ylbF 2053592..2054041 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  D0808_RS10680 (D0808_10770) ylbG 2054096..2054368 (+) 273 WP_009967171.1 YlbG family protein -
  D0808_RS10685 (D0808_10775) rsmD 2054691..2055245 (+) 555 WP_019258325.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  D0808_RS10690 (D0808_10780) coaD 2055250..2055735 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  D0808_RS10695 (D0808_10785) spoVV 2055746..2056972 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  D0808_RS10700 (D0808_10790) ylbK 2057153..2057935 (+) 783 WP_003232221.1 patatin family protein -
  D0808_RS10705 (D0808_10795) sepM 2057937..2058959 (+) 1023 WP_153256006.1 protease DdcP Regulator
  D0808_RS10710 (D0808_10800) - 2059150..2059599 (-) 450 WP_128737830.1 hypothetical protein -
  D0808_RS10715 (D0808_10805) - 2059672..2060904 (-) 1233 WP_128737831.1 nucleotidyltransferase -
  D0808_RS10720 (D0808_10810) - 2060901..2061086 (-) 186 WP_003232215.1 hypothetical protein -
  D0808_RS10725 (D0808_10815) ylbN 2061114..2061632 (+) 519 WP_069837491.1 DUF177 domain-containing protein -
  D0808_RS10730 (D0808_10820) rpmF 2061654..2061833 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  D0808_RS10735 (D0808_10825) gerR 2061979..2062560 (+) 582 WP_153256007.1 sporulation specific transcriptional regulator GerR -
  D0808_RS10740 (D0808_10830) ylbP 2062617..2063099 (-) 483 WP_003244940.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37577.20 Da        Isoelectric Point: 7.1986

>NTDB_id=271129 D0808_RS10705 WP_153256006.1 2057937..2058959(+) (sepM) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLKLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=271129 D0808_RS10705 WP_153256006.1 2057937..2058959(+) (sepM) [Bacillus subtilis strain MENO2 voucher National Research Centre]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTAAGTTAAAACAATTCCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCTGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.429

100

0.406