Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   D0808_RS10675 Genome accession   NZ_CP031783
Coordinates   2053592..2054041 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2048592..2059041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS10635 (D0808_10725) ctaE 2048609..2049232 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  D0808_RS10640 (D0808_10730) ctaF 2049235..2049567 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  D0808_RS10645 (D0808_10735) ctaG 2049594..2050487 (+) 894 WP_024573214.1 cytochrome c oxidase assembly factor CtaG -
  D0808_RS10650 (D0808_10740) ylbA 2050519..2050881 (-) 363 WP_003232238.1 YugN family protein -
  D0808_RS10655 (D0808_10745) ylbB 2051021..2051467 (+) 447 WP_003221362.1 CBS domain-containing protein -
  D0808_RS10660 (D0808_10750) ylbC 2051551..2052591 (+) 1041 WP_015483195.1 CAP domain-containing protein -
  D0808_RS10665 (D0808_10755) ylbD 2052823..2053221 (+) 399 WP_014476725.1 YlbD family protein -
  D0808_RS10670 (D0808_10760) ylbE 2053237..2053476 (+) 240 WP_003232231.1 YlbE-like family protein -
  D0808_RS10675 (D0808_10765) ylbF 2053592..2054041 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  D0808_RS10680 (D0808_10770) ylbG 2054096..2054368 (+) 273 WP_009967171.1 YlbG family protein -
  D0808_RS10685 (D0808_10775) rsmD 2054691..2055245 (+) 555 WP_019258325.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  D0808_RS10690 (D0808_10780) coaD 2055250..2055735 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  D0808_RS10695 (D0808_10785) spoVV 2055746..2056972 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  D0808_RS10700 (D0808_10790) ylbK 2057153..2057935 (+) 783 WP_003232221.1 patatin family protein -
  D0808_RS10705 (D0808_10795) sepM 2057937..2058959 (+) 1023 WP_153256006.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=271128 D0808_RS10675 WP_003221370.1 2053592..2054041(+) (ylbF) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=271128 D0808_RS10675 WP_003221370.1 2053592..2054041(+) (ylbF) [Bacillus subtilis strain MENO2 voucher National Research Centre]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAAATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1