Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   D1F65_RS08340 Genome accession   NZ_CP031779
Coordinates   1668658..1669344 (-) Length   228 a.a.
NCBI ID   WP_001802022.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFBR-105     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1663658..1674344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1F65_RS08320 (D1F65_08320) rpsT 1664572..1664823 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  D1F65_RS08325 (D1F65_08325) holA 1664868..1665842 (-) 975 WP_001282563.1 DNA polymerase III subunit delta -
  D1F65_RS08330 (D1F65_08330) comEC 1665899..1668100 (-) 2202 WP_001557362.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D1F65_RS08335 (D1F65_08335) - 1668105..1668566 (-) 462 WP_000439693.1 ComE operon protein 2 -
  D1F65_RS08340 (D1F65_08340) comEA 1668658..1669344 (-) 687 WP_001802022.1 ComEA family DNA-binding protein Machinery gene
  D1F65_RS08345 (D1F65_08345) - 1669384..1670100 (-) 717 WP_000084830.1 class I SAM-dependent methyltransferase -
  D1F65_RS08350 (D1F65_08350) rsfS 1670103..1670456 (-) 354 WP_001088020.1 ribosome silencing factor -
  D1F65_RS08355 (D1F65_08355) yqeK 1670457..1671041 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  D1F65_RS08360 (D1F65_08360) nadD 1671031..1671600 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  D1F65_RS08365 (D1F65_08365) yhbY 1671603..1671893 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  D1F65_RS08370 (D1F65_08370) aroE 1671897..1672703 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  D1F65_RS08375 (D1F65_08375) yqeH 1672717..1673817 (-) 1101 WP_001280137.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25900.65 Da        Isoelectric Point: 9.6751

>NTDB_id=270938 D1F65_RS08340 WP_001802022.1 1668658..1669344(-) (comEA) [Staphylococcus aureus strain CFBR-105]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=270938 D1F65_RS08340 WP_001802022.1 1668658..1669344(-) (comEA) [Staphylococcus aureus strain CFBR-105]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

100

1
  comEA Staphylococcus aureus MW2

97.368

100

0.974