Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C3Y93_RS10885 Genome accession   NZ_CP026616
Coordinates   2262286..2263719 (-) Length   477 a.a.
NCBI ID   WP_104852914.1    Uniprot ID   A0A2L2M0K1
Organism   Acinetobacter sp. SWBY1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2257286..2268719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS10870 (C3Y93_10870) lptG 2258285..2259355 (+) 1071 WP_004975683.1 LPS export ABC transporter permease LptG -
  C3Y93_RS10875 (C3Y93_10875) gpmI 2259501..2261048 (+) 1548 WP_104852912.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  C3Y93_RS10880 (C3Y93_10880) - 2261073..2262236 (+) 1164 WP_104852913.1 S41 family peptidase -
  C3Y93_RS10885 (C3Y93_10885) pilR 2262286..2263719 (-) 1434 WP_104852914.1 sigma-54-dependent transcriptional regulator Regulator
  C3Y93_RS10890 (C3Y93_10890) pilS 2263789..2265351 (-) 1563 WP_104852915.1 sensor histidine kinase Regulator
  C3Y93_RS10895 (C3Y93_10895) - 2265392..2266027 (-) 636 WP_104852916.1 response regulator -
  C3Y93_RS10900 (C3Y93_10900) - 2266243..2267334 (+) 1092 WP_131260992.1 serine hydrolase -
  C3Y93_RS10905 (C3Y93_10905) thrC 2267455..2268594 (-) 1140 WP_104852917.1 threonine synthase -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53647.57 Da        Isoelectric Point: 5.8670

>NTDB_id=270917 C3Y93_RS10885 WP_104852914.1 2262286..2263719(-) (pilR) [Acinetobacter sp. SWBY1]
MHAVQPLVLLVDDEEDLCTLMQMTLARMGIQTHVAYRLVQAKQLLAEHQYDACLTDLNLPDGNGLQLVEWISEQYPNVPV
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQIHLQQLLEKALNKPFDTTDHHSQDQLEYKMLIGQSLPIQQLRSTIKKIAR
SQAPVFITGESGTGKEVVANLAHRLSNRNEGPFIAINCGAIPTDLMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLD
EIAELPLSMQVKLLRAVQEKRIRPVGSDSEIDVDFRVISASHQDLESLVQQGRFRQDLFFRIHVMDLVLPALRERGQDIL
LLADHFIQKVAQEWDIPAKQLTPRAQQFLLEQYYPGNVRELRNIIERAITLSDEDVIDLKHLQTAPLRQFSISNIATAEP
QPAAETPQQIVTDVLLTGRKLPEEGLEAYLEKVEKDILLNALHLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEDE

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=270917 C3Y93_RS10885 WP_104852914.1 2262286..2263719(-) (pilR) [Acinetobacter sp. SWBY1]
ATGCACGCTGTTCAACCTTTGGTTTTATTGGTCGATGACGAAGAAGACCTTTGTACCCTCATGCAGATGACTTTGGCACG
TATGGGGATTCAAACCCATGTCGCGTATCGTTTGGTGCAAGCCAAGCAGTTATTGGCAGAACATCAGTACGATGCTTGCT
TAACCGACTTAAACCTGCCCGATGGCAATGGCTTGCAACTGGTTGAATGGATTTCCGAACAATATCCGAATGTGCCTGTT
GCCGTATTGACCGCTTACGGCAATATGGATATTGCGATTGCTGCTTTAAAAGCAGGTGCATTTGACTTTGTCAGCAAGCC
TGTCAATCAAATACATTTACAGCAACTCCTTGAAAAAGCACTGAATAAACCTTTCGACACCACCGATCATCACAGCCAAG
ATCAGCTTGAATATAAAATGTTGATTGGGCAATCTTTGCCTATTCAGCAATTACGCAGCACCATCAAAAAAATTGCGCGC
TCGCAAGCGCCTGTGTTTATTACAGGCGAATCAGGTACGGGAAAGGAAGTTGTCGCCAATTTGGCTCACCGCTTAAGCAA
CCGCAACGAAGGACCATTTATTGCAATTAACTGCGGCGCGATTCCCACCGATCTCATGGAAAGCGAGCTATTTGGACACA
AAAAAGGTAGCTTTACAGGAGCGACTCAAGACAAACAAGGTCTGATTCAATCTGCACATGGTGGCAGCTTATTTTTAGAT
GAAATTGCCGAACTGCCACTGAGCATGCAAGTCAAACTGCTGCGTGCCGTTCAGGAAAAGCGCATCCGTCCTGTGGGTTC
AGATAGTGAAATTGATGTCGATTTTCGAGTGATCAGCGCCAGTCATCAGGACTTAGAAAGTTTGGTTCAGCAAGGACGTT
TCCGTCAGGATTTATTCTTCCGAATTCACGTGATGGATTTGGTCTTGCCTGCCCTGCGTGAACGTGGACAAGATATTCTA
TTATTGGCAGACCACTTCATTCAAAAAGTTGCACAAGAATGGGATATTCCTGCCAAACAACTGACGCCACGCGCCCAGCA
ATTTTTATTAGAGCAATACTATCCGGGCAATGTGCGTGAATTACGCAATATAATTGAACGTGCCATTACCCTGAGTGATG
AGGATGTTATTGATCTCAAACACTTACAAACTGCACCCTTACGCCAATTCAGCATAAGCAATATAGCAACCGCTGAACCG
CAACCCGCAGCAGAAACACCACAGCAGATCGTGACAGATGTATTGCTGACAGGACGCAAACTGCCTGAAGAAGGTTTAGA
AGCCTACTTGGAAAAAGTAGAAAAAGACATTTTACTGAATGCGCTGCACCTGACCCACTGGAACCGTACGTTGGCAGCAA
AAAAATTGGGCATGTCTTTCCGTTCTTTGCGCTATCGTCTGAAAAAGTTTGGATTAGATACTGAAGATGAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L2M0K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

76.778

100

0.769
  pilR Pseudomonas aeruginosa PAK

49.142

97.694

0.48

Multiple sequence alignment