Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   C3Y93_RS08285 Genome accession   NZ_CP026616
Coordinates   1722347..1722982 (-) Length   211 a.a.
NCBI ID   WP_104852652.1    Uniprot ID   -
Organism   Acinetobacter sp. SWBY1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1717347..1727982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS14445 (C3Y93_08265) aroK 1718349..1718879 (-) 531 WP_104852648.1 shikimate kinase AroK -
  C3Y93_RS08270 (C3Y93_08270) pilQ 1718917..1721055 (-) 2139 WP_171287418.1 type IV pilus secretin PilQ family protein Machinery gene
  C3Y93_RS08275 (C3Y93_08275) pilP 1721116..1721640 (-) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  C3Y93_RS08280 (C3Y93_08280) comO 1721640..1722350 (-) 711 WP_104852651.1 type 4a pilus biogenesis protein PilO Machinery gene
  C3Y93_RS08285 (C3Y93_08285) comN 1722347..1722982 (-) 636 WP_104852652.1 PilN domain-containing protein Machinery gene
  C3Y93_RS08290 (C3Y93_08290) pilM 1722982..1724040 (-) 1059 WP_104852653.1 pilus assembly protein PilM Machinery gene
  C3Y93_RS08295 (C3Y93_08295) ponA 1724210..1726762 (+) 2553 WP_104852654.1 penicillin-binding protein PBP1a -
  C3Y93_RS08300 (C3Y93_08300) - 1726886..1727689 (-) 804 WP_104852655.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23566.94 Da        Isoelectric Point: 6.4710

>NTDB_id=270909 C3Y93_RS08285 WP_104852652.1 1722347..1722982(-) (comN) [Acinetobacter sp. SWBY1]
MAKINLLPWRDELREKRKKEFIVFCIAAAAVGVLAVALAWFFYNAKLADQEQANQLVISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQSQRPIAVRLVDELVRVTPSNMYLTKVTRTGNKFTFEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
KEENKDKAPSSVVPRVEESYGTFVVTSDLEEIAIPVTATDPNSTSAAGAAQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=270909 C3Y93_RS08285 WP_104852652.1 1722347..1722982(-) (comN) [Acinetobacter sp. SWBY1]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAGAAAAACGTAAAAAAGAATTTATTGTATTTTGTATTGC
AGCAGCTGCTGTAGGGGTGTTGGCCGTTGCATTGGCGTGGTTTTTCTACAATGCAAAATTGGCAGATCAAGAACAAGCCA
ATCAATTGGTCATCAGTACCAACCAAAACCTAGATGTACAATTAAAATCTTTGGAAGGCTTACAAGAACAGCGTAATGCA
ATTGTAGAGCGTATGAAGCTGATTCAGGGCTTACAAAGCCAACGTCCAATTGCAGTACGTTTGGTGGATGAGCTTGTGCG
TGTGACACCAAGCAATATGTATTTGACTAAAGTGACGCGTACTGGCAATAAATTTACCTTTGAAGGCAAGGCAGAAAGTC
CAAATACGGTTGCAGAATTCTTACGTAATTTGGAAGCATCGCCGTGGTATCGCAATGCATTTATGAATTCATTCTTAGCC
AAAGAAGAAAATAAAGATAAAGCACCAAGTTCTGTAGTTCCTCGTGTTGAGGAAAGTTATGGCACATTTGTGGTGACTTC
TGATTTAGAAGAAATCGCAATTCCAGTGACCGCTACAGATCCTAATTCAACATCAGCAGCGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

71.77

99.052

0.711
  pilN Acinetobacter baumannii D1279779

69.484

100

0.701

Multiple sequence alignment