Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   C3Y93_RS08280 Genome accession   NZ_CP026616
Coordinates   1721640..1722350 (-) Length   236 a.a.
NCBI ID   WP_104852651.1    Uniprot ID   -
Organism   Acinetobacter sp. SWBY1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1716640..1727350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS08260 (C3Y93_08260) aroB 1717239..1718318 (-) 1080 WP_104852647.1 3-dehydroquinate synthase -
  C3Y93_RS14445 (C3Y93_08265) aroK 1718349..1718879 (-) 531 WP_104852648.1 shikimate kinase AroK -
  C3Y93_RS08270 (C3Y93_08270) pilQ 1718917..1721055 (-) 2139 WP_171287418.1 type IV pilus secretin PilQ family protein Machinery gene
  C3Y93_RS08275 (C3Y93_08275) pilP 1721116..1721640 (-) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  C3Y93_RS08280 (C3Y93_08280) comO 1721640..1722350 (-) 711 WP_104852651.1 type 4a pilus biogenesis protein PilO Machinery gene
  C3Y93_RS08285 (C3Y93_08285) comN 1722347..1722982 (-) 636 WP_104852652.1 PilN domain-containing protein Machinery gene
  C3Y93_RS08290 (C3Y93_08290) pilM 1722982..1724040 (-) 1059 WP_104852653.1 pilus assembly protein PilM Machinery gene
  C3Y93_RS08295 (C3Y93_08295) ponA 1724210..1726762 (+) 2553 WP_104852654.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26575.09 Da        Isoelectric Point: 4.7532

>NTDB_id=270908 C3Y93_RS08280 WP_104852651.1 1721640..1722350(-) (comO) [Acinetobacter sp. SWBY1]
MSLDEFDEVNQEAAVAPKKKMTVEKFFQQFNTLDPNNYGGWPLSVKITCWIFIIFLIAALGYFVVIKPKLDAIAAAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFEIVATENKDKKTDIPQVTYKAQAKTYRYVGSADTQTAANTAGGAQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=270908 C3Y93_RS08280 WP_104852651.1 1721640..1722350(-) (comO) [Acinetobacter sp. SWBY1]
ATGAGTCTCGATGAATTTGATGAAGTAAATCAGGAAGCTGCTGTTGCTCCGAAAAAGAAAATGACCGTTGAGAAGTTTTT
TCAGCAGTTTAATACCCTTGATCCAAATAACTATGGTGGTTGGCCACTTTCGGTCAAAATTACCTGCTGGATTTTCATTA
TTTTCTTAATTGCGGCACTAGGTTACTTTGTTGTAATTAAGCCGAAGTTAGATGCCATTGCTGCAGCGCATGCACAAGAA
CAGAATTTATTAAACGAGTTCCGTGAAAAAGATTCTAAATTGCGTAATTTGCAACAATATCAAGCGCAATTACAAGAAAT
GGAAGCTAACTTTAACCAGCAGCTTGAGCAATTGCCGAAAGAAACTGAAATTCCAGGCTTGGTTGAAGACATCAACGTTA
CAGGTGTTAATTCAGGATTGAAGTTTAAAAACATTCGCTTAGAGAATGAGATCAAACAAGAGTTCTTTATTGAACAGCCA
ATTTCGATTGAAGCAACAGGTGACTATCACGCTTTTGGTTCTTTTGTAAGTGGTACTGCAGCATTGCCGCGTATTGTGAC
TATGCATGATTTTGAAATTGTGGCGACTGAAAATAAAGACAAGAAAACAGATATTCCACAAGTGACATATAAAGCGCAAG
CGAAGACATATCGTTACGTGGGTAGTGCAGATACACAAACTGCGGCTAACACTGCTGGAGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

70.902

100

0.733
  pilO Acinetobacter baumannii D1279779

72.34

99.576

0.72

Multiple sequence alignment