Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   D1F65_RS04960 Genome accession   NZ_CP031779
Coordinates   1000054..1000623 (-) Length   189 a.a.
NCBI ID   WP_000287265.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFBR-105     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 995054..1005623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1F65_RS04935 (D1F65_04935) - 996536..998047 (+) 1512 WP_000414165.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  D1F65_RS04945 (D1F65_04945) - 998186..999505 (+) 1320 WP_001557163.1 ISL3-like element IS1181 family transposase -
  D1F65_RS14410 - 999508..999585 (+) 78 Protein_924 hypothetical protein -
  D1F65_RS04960 (D1F65_04960) comK/comK1 1000054..1000623 (-) 570 WP_000287265.1 competence protein ComK Regulator
  D1F65_RS04965 (D1F65_04965) - 1000833..1001051 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  D1F65_RS04970 (D1F65_04970) - 1001132..1002118 (-) 987 WP_000668818.1 lipoate--protein ligase -
  D1F65_RS04975 (D1F65_04975) - 1002317..1002493 (+) 177 WP_000214898.1 YkvS family protein -
  D1F65_RS04980 (D1F65_04980) - 1002508..1003110 (+) 603 WP_001033865.1 CPBP family glutamic-type intramembrane protease -
  D1F65_RS14415 - 1003425..1003487 (+) 63 WP_228764722.1 hypothetical protein -
  D1F65_RS04990 (D1F65_04990) - 1004026..1004127 (+) 102 WP_001792055.1 hypothetical protein -
  D1F65_RS04995 (D1F65_04995) - 1004149..1004409 (+) 261 WP_033860750.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=270908 D1F65_RS04960 WP_000287265.1 1000054..1000623(-) (comK/comK1) [Staphylococcus aureus strain CFBR-105]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=270908 D1F65_RS04960 WP_000287265.1 1000054..1000623(-) (comK/comK1) [Staphylococcus aureus strain CFBR-105]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCTATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterProScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

100

100

1
  comK/comK1 Staphylococcus aureus N315

100

100

1

Multiple sequence alignment