Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C3Y93_RS07860 Genome accession   NZ_CP026616
Coordinates   1637562..1638197 (+) Length   211 a.a.
NCBI ID   WP_104852593.1    Uniprot ID   -
Organism   Acinetobacter sp. SWBY1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1632562..1643197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS07850 (C3Y93_07850) - 1634640..1635461 (-) 822 WP_104852591.1 NAD-dependent epimerase/dehydratase family protein -
  C3Y93_RS07855 (C3Y93_07855) recG 1635498..1637543 (+) 2046 WP_104852592.1 ATP-dependent DNA helicase RecG -
  C3Y93_RS07860 (C3Y93_07860) comF 1637562..1638197 (+) 636 WP_104852593.1 ComF family protein Machinery gene
  C3Y93_RS07865 (C3Y93_07865) - 1638272..1638682 (-) 411 WP_004974664.1 NUDIX hydrolase -
  C3Y93_RS07870 (C3Y93_07870) - 1638684..1639286 (-) 603 WP_026438479.1 TIGR00730 family Rossman fold protein -
  C3Y93_RS07875 (C3Y93_07875) - 1639441..1640454 (+) 1014 WP_096901036.1 CorA family divalent cation transporter -
  C3Y93_RS07880 (C3Y93_07880) - 1640681..1640968 (-) 288 WP_104852594.1 STAS domain-containing protein -
  C3Y93_RS07885 (C3Y93_07885) - 1640981..1641616 (-) 636 WP_004974651.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  C3Y93_RS07890 (C3Y93_07890) - 1641632..1642309 (-) 678 WP_096901228.1 outer membrane lipid asymmetry maintenance protein MlaD -
  C3Y93_RS07895 (C3Y93_07895) mlaE 1642309..1643088 (-) 780 WP_104852595.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24549.58 Da        Isoelectric Point: 9.7066

>NTDB_id=270905 C3Y93_RS07860 WP_104852593.1 1637562..1638197(+) (comF) [Acinetobacter sp. SWBY1]
MTQPINLLQCGIQWLRQLQPCQLCHSDTQWQHSVCQTCWQQLPWRSQAVQRQEIQIQVAFDYHYPINRIIQQFKYEQQLH
YQLLLVGALKQLSYPKIQAIVPMPISTARLTERGYNQSLLLAKGLARHLNVPIWQPVTRLQQHAQKGLSRLERLEDIQQQ
FQIQNAPKIRFRRVLIVDDVVTTGSSIHALKQQLLKLGCQKVEAVCLASAE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=270905 C3Y93_RS07860 WP_104852593.1 1637562..1638197(+) (comF) [Acinetobacter sp. SWBY1]
ATGACTCAGCCGATCAATCTACTACAATGCGGCATACAATGGCTGCGCCAACTGCAACCGTGTCAGCTCTGCCATAGCGA
CACGCAATGGCAACATTCAGTCTGTCAAACCTGTTGGCAACAATTACCGTGGCGTAGCCAAGCGGTACAACGACAAGAAA
TACAGATTCAAGTCGCCTTTGATTATCACTATCCAATTAATCGCATCATTCAACAATTTAAATATGAACAGCAGTTACAT
TACCAACTGCTTTTAGTAGGCGCGCTAAAACAACTGTCTTATCCTAAAATCCAAGCCATTGTACCGATGCCAATTTCCAC
TGCCCGCTTGACTGAACGCGGCTACAATCAATCTTTATTGTTAGCAAAAGGACTAGCGCGGCATTTAAATGTCCCGATTT
GGCAACCTGTGACCCGCTTACAACAGCACGCGCAAAAAGGCTTAAGTCGCTTAGAAAGATTGGAAGACATCCAACAGCAA
TTTCAAATTCAGAATGCGCCTAAAATCCGTTTTCGTCGGGTTTTAATTGTGGATGATGTGGTCACGACGGGCAGTTCAAT
TCATGCACTCAAACAGCAGTTGCTCAAGCTCGGCTGTCAAAAAGTCGAGGCGGTTTGTCTGGCCAGTGCTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

62.176

91.469

0.569
  comF Acinetobacter baumannii D1279779

61.658

91.469

0.564

Multiple sequence alignment