Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D1F63_RS06470 Genome accession   NZ_CP031770
Coordinates   1238122..1238718 (-) Length   198 a.a.
NCBI ID   WP_002983939.1    Uniprot ID   P65996
Organism   Streptococcus pyogenes strain SASM4-Duke     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1233122..1243718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1F63_RS06455 (D1F63_06455) - 1234611..1235306 (-) 696 WP_011528772.1 TIGR02206 family membrane protein -
  D1F63_RS06460 (D1F63_06460) murF 1235386..1236777 (-) 1392 WP_011184722.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  D1F63_RS06465 (D1F63_06465) - 1236975..1238021 (-) 1047 WP_011528773.1 D-alanine--D-alanine ligase -
  D1F63_RS06470 (D1F63_06470) recR 1238122..1238718 (-) 597 WP_002983939.1 recombination mediator RecR Machinery gene
  D1F63_RS10165 (D1F63_06475) - 1238765..1238956 (-) 192 WP_002983936.1 hypothetical protein -
  D1F63_RS06480 (D1F63_06480) - 1239516..1240295 (-) 780 WP_002989141.1 formate/nitrite transporter family protein -
  D1F63_RS06485 (D1F63_06485) - 1240419..1240961 (-) 543 WP_002989140.1 hypothetical protein -
  D1F63_RS06490 (D1F63_06490) - 1241122..1241643 (-) 522 WP_002983930.1 transcription repressor NadR -
  D1F63_RS06495 (D1F63_06495) - 1241751..1242446 (-) 696 WP_002983928.1 phosphoglycerate mutase -
  D1F63_RS06500 (D1F63_06500) - 1242685..1243620 (+) 936 WP_021299339.1 dihydroorotate oxidase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21644.79 Da        Isoelectric Point: 4.8853

>NTDB_id=270840 D1F63_RS06470 WP_002983939.1 1238122..1238718(-) (recR) [Streptococcus pyogenes strain SASM4-Duke]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=270840 D1F63_RS06470 WP_002983939.1 1238122..1238718(-) (recR) [Streptococcus pyogenes strain SASM4-Duke]
GTGCTTTATCCAACACCCATTGCAAAGTTAATTGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAACTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGTCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTGTGGGGCCAGATGACATCAACCTTAAAAGTTTAATTACCCGTCTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGGATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65996

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.889

100

0.889
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5