Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C3Z10_RS18840 Genome accession   NZ_CP026610
Coordinates   3784031..3785416 (-) Length   461 a.a.
NCBI ID   WP_040238815.1    Uniprot ID   -
Organism   Bacillus velezensis strain CGMCC 11640     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3779031..3790416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Z10_RS18805 (C3Z10_18805) flgL 3779206..3780123 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  C3Z10_RS18810 (C3Z10_18810) flgK 3780135..3781652 (-) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  C3Z10_RS18815 (C3Z10_18815) - 3781668..3782150 (-) 483 WP_003151394.1 flagellar protein FlgN -
  C3Z10_RS18820 (C3Z10_18820) flgM 3782165..3782431 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C3Z10_RS18825 (C3Z10_18825) - 3782501..3782920 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  C3Z10_RS18830 (C3Z10_18830) comFC 3782994..3783683 (-) 690 WP_199776864.1 phosphoribosyltransferase family protein Machinery gene
  C3Z10_RS18835 (C3Z10_18835) - 3783689..3783973 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  C3Z10_RS18840 (C3Z10_18840) comFA 3784031..3785416 (-) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  C3Z10_RS18845 (C3Z10_18845) - 3785524..3786372 (-) 849 WP_015418336.1 DegV family protein -
  C3Z10_RS18850 (C3Z10_18850) degU 3786470..3787159 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C3Z10_RS18855 (C3Z10_18855) degS 3787236..3788399 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  C3Z10_RS18860 (C3Z10_18860) - 3788622..3789269 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52515.94 Da        Isoelectric Point: 10.0818

>NTDB_id=270808 C3Z10_RS18840 WP_040238815.1 3784031..3785416(-) (comFA) [Bacillus velezensis strain CGMCC 11640]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKKAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVDVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=270808 C3Z10_RS18840 WP_040238815.1 3784031..3785416(-) (comFA) [Bacillus velezensis strain CGMCC 11640]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGAAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTATGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTAGACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment