Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C3Z10_RS18830 Genome accession   NZ_CP026610
Coordinates   3782994..3783683 (-) Length   229 a.a.
NCBI ID   WP_199776864.1    Uniprot ID   -
Organism   Bacillus velezensis strain CGMCC 11640     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3777994..3788683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Z10_RS18795 (C3Z10_18795) fliW 3778085..3778516 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  C3Z10_RS18800 (C3Z10_18800) - 3778546..3779115 (-) 570 WP_040238821.1 DUF6470 family protein -
  C3Z10_RS18805 (C3Z10_18805) flgL 3779206..3780123 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  C3Z10_RS18810 (C3Z10_18810) flgK 3780135..3781652 (-) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  C3Z10_RS18815 (C3Z10_18815) - 3781668..3782150 (-) 483 WP_003151394.1 flagellar protein FlgN -
  C3Z10_RS18820 (C3Z10_18820) flgM 3782165..3782431 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C3Z10_RS18825 (C3Z10_18825) - 3782501..3782920 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  C3Z10_RS18830 (C3Z10_18830) comFC 3782994..3783683 (-) 690 WP_199776864.1 phosphoribosyltransferase family protein Machinery gene
  C3Z10_RS18835 (C3Z10_18835) - 3783689..3783973 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  C3Z10_RS18840 (C3Z10_18840) comFA 3784031..3785416 (-) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  C3Z10_RS18845 (C3Z10_18845) - 3785524..3786372 (-) 849 WP_015418336.1 DegV family protein -
  C3Z10_RS18850 (C3Z10_18850) degU 3786470..3787159 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C3Z10_RS18855 (C3Z10_18855) degS 3787236..3788399 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25235.79 Da        Isoelectric Point: 8.0779

>NTDB_id=270807 C3Z10_RS18830 WP_199776864.1 3782994..3783683(-) (comFC) [Bacillus velezensis strain CGMCC 11640]
MNCLLCDSSISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=270807 C3Z10_RS18830 WP_199776864.1 3782994..3783683(-) (comFC) [Bacillus velezensis strain CGMCC 11640]
CTGAATTGTTTATTGTGTGACTCATCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment