Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C3Z10_RS16780 Genome accession   NZ_CP026610
Coordinates   3358752..3359396 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain CGMCC 11640     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3353752..3364396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Z10_RS16745 (C3Z10_16745) - 3354937..3355368 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  C3Z10_RS16750 (C3Z10_16750) - 3355368..3355709 (+) 342 WP_015418102.1 Na(+)/H(+) antiporter subunit C -
  C3Z10_RS16755 (C3Z10_16755) - 3355702..3357183 (+) 1482 WP_015418103.1 Na+/H+ antiporter subunit D -
  C3Z10_RS16760 (C3Z10_16760) - 3357189..3357665 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  C3Z10_RS16765 (C3Z10_16765) - 3357665..3357949 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  C3Z10_RS16770 (C3Z10_16770) mnhG 3357933..3358307 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  C3Z10_RS16775 (C3Z10_16775) - 3358347..3358730 (-) 384 WP_040238946.1 hotdog fold thioesterase -
  C3Z10_RS16780 (C3Z10_16780) comA 3358752..3359396 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  C3Z10_RS16785 (C3Z10_16785) - 3359477..3361776 (-) 2300 Protein_3255 histidine kinase -
  C3Z10_RS16795 (C3Z10_16795) comQ 3361929..3362915 (-) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  C3Z10_RS16800 (C3Z10_16800) degQ 3363046..3363186 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  C3Z10_RS16810 (C3Z10_16810) - 3363649..3363990 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=270802 C3Z10_RS16780 WP_003152052.1 3358752..3359396(-) (comA) [Bacillus velezensis strain CGMCC 11640]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=270802 C3Z10_RS16780 WP_003152052.1 3358752..3359396(-) (comA) [Bacillus velezensis strain CGMCC 11640]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment