Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SGO_RS07105 Genome accession   NC_009785
Coordinates   1499832..1500428 (-) Length   198 a.a.
NCBI ID   WP_012130528.1    Uniprot ID   A8AY67
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1494832..1505428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS07080 (SGO_1443) - 1495357..1496052 (-) 696 WP_012130524.1 TIGR02206 family membrane protein -
  SGO_RS07085 (SGO_1444) - 1496054..1496764 (-) 711 WP_041789725.1 TIGR02206 family membrane protein -
  SGO_RS07090 (SGO_1445) - 1496821..1497120 (-) 300 Protein_1406 NUDIX domain-containing protein -
  SGO_RS11160 - 1497113..1497220 (-) 108 WP_048809544.1 NUDIX hydrolase N-terminal domain-containing protein -
  SGO_RS07095 (SGO_1446) - 1497210..1498580 (-) 1371 WP_012130526.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SGO_RS07100 (SGO_1447) - 1498656..1499702 (-) 1047 WP_012130527.1 D-alanine--D-alanine ligase -
  SGO_RS07105 (SGO_1448) recR 1499832..1500428 (-) 597 WP_012130528.1 recombination mediator RecR Machinery gene
  SGO_RS07110 (SGO_1449) pbp2b 1500439..1502505 (-) 2067 WP_172601491.1 penicillin-binding protein PBP2B -
  SGO_RS07115 (SGO_1450) cvfB 1502670..1503524 (-) 855 WP_012130530.1 RNA-binding virulence regulatory protein CvfB -
  SGO_RS07120 (SGO_1451) frr 1503624..1504181 (-) 558 WP_012130531.1 ribosome recycling factor -
  SGO_RS07125 (SGO_1452) pyrH 1504203..1504928 (-) 726 WP_008809391.1 UMP kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21657.70 Da        Isoelectric Point: 4.4453

>NTDB_id=27078 SGO_RS07105 WP_012130528.1 1499832..1500428(-) (recR) [Streptococcus gordonii str. Challis substr. CH1]
MLYPTPIAKLIDSFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELSYCSICGNLTDEDPCAICRDESRDQS
TILIVEDSRDVSAMENIQEYHGLYHVLHGLISPMNGVGPDDINLKSLITRLMDSEVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLIRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=27078 SGO_RS07105 WP_012130528.1 1499832..1500428(-) (recR) [Streptococcus gordonii str. Challis substr. CH1]
ATGTTATATCCAACCCCTATCGCTAAGCTCATTGATAGTTTCTCAAAACTGCCTGGTATCGGTATCAAGACAGCTACACG
TTTAGCCTTTTACACCATTGGAATGAGTGATGATGATGTCAACGAATTTGCTAAAAATCTTTTGGCAGCTAAGCGTGAAC
TAAGTTACTGCTCAATTTGTGGTAATCTGACGGATGAAGATCCCTGCGCTATTTGTCGAGACGAATCGCGTGATCAATCT
ACAATCTTAATTGTTGAGGATAGTAGAGATGTCTCAGCCATGGAAAACATCCAGGAATATCATGGACTTTATCATGTCCT
GCACGGCTTGATTTCACCTATGAACGGTGTTGGACCAGACGATATCAATCTCAAGAGTCTGATTACTCGTTTGATGGATA
GCGAAGTATCGGAGGTTATCGTTGCGACCAATGCAACAGCAGATGGAGAGGCAACCTCCATGTATATCTCAAGGGTCTTG
AAACCTGCCGGCATTAAAGTTACTCGACTAGCGCGTGGTTTAGCTGTTGGTTCTGATATTGAGTATGCGGATGAGGTAAC
CTTGATTCGTGCAATCGAAAATCGGACGGAATTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AY67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

89.394

100

0.894
  recR Bacillus subtilis subsp. subtilis str. 168

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment