Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BKM03_RS04785 Genome accession   NZ_CP026562
Coordinates   944014..945609 (-) Length   531 a.a.
NCBI ID   WP_005740190.1    Uniprot ID   A0A0Q0HUM1
Organism   Pseudomonas avellanae strain R2leaf     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 939014..950609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM03_RS04770 (BKM03_04770) - 940398..941513 (-) 1116 WP_005740188.1 efflux RND transporter periplasmic adaptor subunit -
  BKM03_RS04775 (BKM03_04775) - 941595..942212 (-) 618 WP_005614619.1 TetR/AcrR family transcriptional regulator -
  BKM03_RS04780 (BKM03_04780) pilR 942671..944011 (-) 1341 WP_005740189.1 sigma-54 dependent transcriptional regulator Regulator
  BKM03_RS04785 (BKM03_04785) pilS 944014..945609 (-) 1596 WP_005740190.1 ATP-binding protein Regulator
  BKM03_RS04790 (BKM03_04790) - 945599..945838 (-) 240 WP_057403016.1 PP0621 family protein -
  BKM03_RS04795 (BKM03_04795) - 945968..946990 (-) 1023 WP_005740192.1 outer membrane protein assembly factor BamD -
  BKM03_RS04800 (BKM03_04800) rluD 947140..948102 (+) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BKM03_RS04805 (BKM03_04805) pgeF 948099..948827 (+) 729 WP_005740193.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58218.08 Da        Isoelectric Point: 6.6364

>NTDB_id=270262 BKM03_RS04785 WP_005740190.1 944014..945609(-) (pilS) [Pseudomonas avellanae strain R2leaf]
MTADTPSLTSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARLQVSEGLAEQRAADVDSLEELNALILQRMRTGILVLDASRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLINPIMVPRSITTSSIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEDLSAPDRRLGQIIHDQSQRIDRVIENVLQLSRRREAQPELLDLKVWLENFVSDFRSSAATD
QSIHVQISPGMLTTRMDAGQLTQIITNLVQNGLRYSSRSHPSAQVWLKLQPDRESDLPILEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYLPRPHDGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=270262 BKM03_RS04785 WP_005740190.1 944014..945609(-) (pilS) [Pseudomonas avellanae strain R2leaf]
GTGACCGCTGATACGCCTTCGCTTACCAGCCCGCAGGCACAACGGATTCTGCGGCTGTATCACCTTTATCGACTGACCAT
TGGCGTCGTGCTGGTTCTGTTGATCTCCAGCAGTCTGGAAACCGAGTTGCTGCAACTGGCCAATCCGAATCTGTTCCGTT
CGGGTTGCTGGCTGTACCTGGTGTTCAACATTCTGGTGGTGGTGCTGCTGGAACGCCCCAGCCGCCAGGCGCAGCTGTTT
GGCTTGGCGATGACTGACGCAATCATGCTTTCCGCGCTGTTTTATGCGGCCGGCGGGCCGTCTAGCGGCATCGGCAACCT
GTTGATCGCGTCCGTGGCGATCAGCAACGTGCTGCTGCGAGGCCGTATCGGCCTGTTGATCGCCGCCGTTTCTGCCATTG
GCATCATCTACCTGACGTTCTATATCAGCTTCGGCACACCTTCGGTGTCCAACGACTACGTGCAGGCCGGCTCTCTGGGC
GCGCTGTGCTTCGCCGCCGCGCTGCTGGTGCAGGCACTGACTGCGCGCCTGCAAGTCAGCGAGGGGCTGGCCGAGCAAAG
GGCAGCGGATGTCGACAGCCTTGAAGAGCTCAACGCTCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTGGATG
CGAGCCGTCAGGTGTTGCTGGCCAATCAGGGGGCCTTGACGCTGCTGGGCCACGAACGACTGGTCGGCCAGGTCATCGAC
GCTTACTCGCCGCAGTTGGTAGAGCGCCTGCGCCAGTGGCTGATTAACCCGATCATGGTGCCGCGCAGCATCACCACTTC
ATCTATCGGGCCTGTGCTGCAACCCAGCTTTGCCGCGCTCAATCGGGGCGACCAGCGTCAAACGCTGATTTTCCTTGAGG
ACCTGTCGCAGATTGCCCATCAGGCGCAGCAGCTCAAGCTTGCCGCGCTGGGCCGCCTGACCGCAGGCATCGCCCACGAA
ATACGTAATCCGCTGGGCGCGGTCAGCCACGCTGCGCAGTTACTCAACGAGTCGGAAGACCTCAGCGCGCCGGACCGCCG
TCTGGGGCAGATTATTCACGATCAGTCGCAGCGCATTGATCGGGTGATTGAAAACGTCCTGCAACTGTCTCGCCGACGCG
AAGCACAGCCGGAACTGCTCGACCTGAAAGTCTGGCTGGAAAATTTTGTCAGCGACTTTCGCAGCTCGGCGGCTACGGAT
CAGTCGATTCATGTGCAAATCAGCCCCGGCATGCTGACCACTCGCATGGACGCCGGTCAACTGACCCAGATCATCACCAA
CCTGGTGCAGAACGGCTTACGTTACAGCAGCCGCAGTCACCCGTCGGCGCAAGTCTGGCTGAAGCTGCAGCCAGACCGGG
AAAGCGATTTACCGATTCTGGAAGTCCTGGACGACGGGCCGGGTGTCAGCGAACAACACCTGAGCAAGATTTTCGAACCG
TTTTTCACCACAGAAAGCAAAGGCACCGGCCTGGGTCTATACCTTTCCCGTGAATTGTGCGAAAGCAATCAGGCGCATCT
GGAATACCTCCCACGACCACACGACGGTGGCAGCTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-524)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0HUM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.654

100

0.618

Multiple sequence alignment