Detailed information NTG0270261

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: BKM03_RS04780
• Genome accession: NZ_CP026562
• Coordinates: 942671..944011 (-)
• Length: 446 a.a.
• NCBI ID: WP_005740189.1
• Uniprot ID: A0A2K4W8J0
• Organism: Pseudomonas avellanae strain R2leaf
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 937671..949011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BKM03_RS04770 (BKM03_04770)	-	940398..941513 (-)	1116	WP_005740188.1	efflux RND transporter periplasmic adaptor subunit	-
BKM03_RS04775 (BKM03_04775)	-	941595..942212 (-)	618	WP_005614619.1	TetR/AcrR family transcriptional regulator	-
BKM03_RS04780 (BKM03_04780)	pilR	942671..944011 (-)	1341	WP_005740189.1	sigma-54 dependent transcriptional regulator	Regulator
BKM03_RS04785 (BKM03_04785)	pilS	944014..945609 (-)	1596	WP_005740190.1	ATP-binding protein	Regulator
BKM03_RS04790 (BKM03_04790)	-	945599..945838 (-)	240	WP_057403016.1	PP0621 family protein	-
BKM03_RS04795 (BKM03_04795)	-	945968..946990 (-)	1023	WP_005740192.1	outer membrane protein assembly factor BamD	-
BKM03_RS04800 (BKM03_04800)	rluD	947140..948102 (+)	963	WP_003381266.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
BKM03_RS04805 (BKM03_04805)	pgeF	948099..948827 (+)	729	WP_005740193.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50070.19 Da
• Isoelectric Point: 6.8233

>NTDB_id=270261 BKM03_RS04780 WP_005740189.1 942671..944011(-) (pilR) [Pseudomonas avellanae strain R2leaf]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPCATQPVRSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRINKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQIAAS
VLRRLAGNSTQPVVRLHAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQAQQGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=270261 BKM03_RS04780 WP_005740189.1 942671..944011(-) (pilR) [Pseudomonas avellanae strain R2leaf]
ATGAGCCAACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTTCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACCCGCAGCGCTCGCAACGTTGCCGAGGCCCATGACTGGCTGGCCCGAGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACGGCTACCCCCATGTGCCGGTGGCG
ATGATCACCGCCCACGGCAATCTGGACACGGCGATTCATGCGTTGAAAGCCGGAGCCTTCGATTTCGTGACCAAACCGGT
GGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCCTGCGCCACCCAACCGGTACGCAGCATCGACA
GCCGGCTGCTGGGCGACTCACCGCCGATGCGTACCTTGCGTAACCAGATCGGCAAACTGGCGCGCAGCCAGGCGCCCATT
TACATCAGCGGCGAGTCGGGCAGCGGCAAAGAGCTGGTAGCCCGGCTGATCCACGAGCAAGGGCCGCGCATCAACAAACC
CTTCGTGCCGGTCAACTGCGGGGCGATTCCCTCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCCACGAAGACAAGCCGGGCCTATTCCAGGCGGCGCACAACGGGACGCTGTTCCTTGATGAGGTCGCCGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCGATCCAGGAAAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTGGACGTGCGTATTCTGTGCGCCACCCACAAGGACCTGAATGTCGAAGTCGCTGCGGGCCGTTTCCGTCAAGACCTGT
ATTACCGGCTTAACGTGATCGAACTGCGCGTGCCTTCATTGCGCGAGCGGCGTGAAGACATCGATCAGATTGCAGCCAGC
GTTTTGCGGCGACTTGCAGGCAACAGCACTCAGCCCGTTGTGCGCTTGCATGCGCAGGCTCTGGAAACACTGAAAAGTTA
TCGATTCCCTGGAAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACCCTCTGTGAAAACGATGAAATCCACG
CCAGCGACCTGCGCCTCGCCGAGTCCGCCAGCCCTCAGGCACAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGTTGGAACCGTACTGCTGCGGCCGA
ACGGCTCAGTTTGTCATTCAGATCGTTGCGCTATCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-116)

3D structure

• AlphaFold DB: A0A2K4W8J0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.878	99.327	0.774
pilR	Acinetobacter baumannii strain A118	48.276	100	0.502