Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SGO_RS00045 Genome accession   NC_009785
Coordinates   10780..11865 (-) Length   361 a.a.
NCBI ID   WP_011999564.1    Uniprot ID   A8AU71
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5780..16865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS00030 (SGO_0006) - 6216..7838 (-) 1623 WP_011999562.1 ATP-binding cassette domain-containing protein -
  SGO_RS00035 (SGO_0007) trpS 8068..9090 (+) 1023 WP_011999563.1 tryptophan--tRNA ligase -
  SGO_RS00040 (SGO_0008) guaB 9195..10676 (+) 1482 WP_008808044.1 IMP dehydrogenase -
  SGO_RS00045 (SGO_0009) recF 10780..11865 (-) 1086 WP_011999564.1 DNA replication/repair protein RecF Machinery gene
  SGO_RS00050 (SGO_0010) yaaA 11867..12259 (-) 393 WP_011999565.1 S4 domain-containing protein YaaA -
  SGO_RS00055 (SGO_0011) yfmF 12414..13661 (+) 1248 WP_011999566.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  SGO_RS00060 (SGO_0012) yfmH 13661..14956 (+) 1296 WP_011999567.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SGO_RS00065 (SGO_0013) rodZ 15203..16033 (+) 831 WP_011999568.1 cytoskeleton protein RodZ -
  SGO_RS00070 (SGO_0014) pgsA 16042..16581 (+) 540 WP_011999569.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 41736.96 Da        Isoelectric Point: 8.6577

>NTDB_id=27025 SGO_RS00045 WP_011999564.1 10780..11865(-) (recF) [Streptococcus gordonii str. Challis substr. CH1]
MWLKSLTLKHFRNYQDAEINFHSGLNIFLGQNAQGKTNILESIYFLALTRSHRTRSDKDFIHFQEKDLKVSGILEKKTGT
IPLDIELTAKGRITKINHLKQNRLSDYIGAMNVVLFAPEDLQLIKGSPSLRRKFIDIELGQIKPIYLADLSNYNHVLKQR
NSYLKNSQNIDENFLSVLDEQLIEYGCRVVKHRLDFLKKLEIFAQEKHLDISQKKETLTIDYLSSVPLQDIDSIEESFRL
SLSKNRKRDLFKQNTGVGPHRDDIAFFINQMDANYGSQGQHRSVVLSLKLAEIKLIENITKESPILLLDDVMSELDNDRQ
LKLLETISQEIQTFITTTTLEHLKNLPKDIKIFEISNGNIK

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=27025 SGO_RS00045 WP_011999564.1 10780..11865(-) (recF) [Streptococcus gordonii str. Challis substr. CH1]
ATGTGGCTAAAATCACTCACTCTTAAACATTTTCGTAATTATCAAGATGCAGAAATCAATTTTCACTCTGGTCTCAACAT
TTTTCTTGGCCAAAATGCACAAGGAAAAACAAATATTCTAGAATCTATTTACTTCTTAGCTTTGACTCGTAGTCACCGAA
CTAGATCAGATAAAGATTTTATTCATTTTCAAGAAAAAGATCTCAAAGTATCTGGTATCCTTGAAAAAAAGACGGGAACA
ATTCCGCTTGACATTGAGTTGACAGCTAAGGGACGAATTACTAAAATCAACCATCTCAAGCAAAATAGACTATCTGACTA
TATTGGGGCAATGAATGTTGTTCTGTTTGCACCAGAAGATTTACAACTTATTAAAGGTTCACCTTCATTAAGACGAAAAT
TTATAGATATTGAATTAGGTCAAATCAAGCCTATTTATCTAGCTGATCTTTCCAATTACAATCATGTTCTTAAACAAAGA
AATTCTTATTTAAAGAATAGTCAAAACATTGATGAGAATTTTCTATCTGTTTTAGACGAACAGCTTATTGAATATGGTTG
TCGTGTTGTCAAACATCGTCTAGATTTCTTAAAGAAACTCGAAATATTCGCTCAGGAAAAACACCTTGATATCTCACAAA
AAAAAGAAACTTTAACAATTGACTATCTATCCTCTGTACCTTTACAAGATATTGACAGTATTGAAGAAAGTTTTAGATTA
AGCTTAAGTAAAAATCGAAAAAGAGATTTATTTAAACAAAATACTGGTGTAGGCCCTCATCGAGATGATATAGCTTTCTT
CATTAATCAAATGGATGCTAATTATGGAAGTCAGGGGCAGCACAGAAGTGTTGTACTTTCTCTAAAATTAGCAGAAATCA
AATTGATTGAAAATATAACAAAAGAATCTCCTATCCTCCTTCTTGACGATGTAATGAGTGAACTTGACAATGATCGTCAA
CTTAAATTGCTAGAGACAATCTCTCAAGAAATACAAACTTTTATTACCACAACTACTTTGGAACACCTAAAAAATCTACC
TAAAGATATCAAAATTTTTGAAATTTCAAATGGAAATATAAAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AU71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.95

99.169

0.704
  recF Bacillus subtilis subsp. subtilis str. 168

44.715

100

0.457